[Homer-users] Atlas Viewer MC Processing Error

[jdubb at nmr.mgh.harvard.edu]

Hi Hada,

That is a known bug in the older release 2.0.

I believe it is fixed in the latest release 2.1
currently on the NITRC Homer2 webpage.

Please go to the Homer2 page and download
the latest release and let me know if that issue is
fixed.

Jay


> Hi Jay
>
> For mine:
>
> a) Matlab 2012a (not exe)
>
> b) \HomER\Homer2_2_0_20150331\homer2\PACKAGES
>
> c) Windows7 OS
>
> Thanks!
>
>
> Sincerely,
> Hada
>
>
> From: Hada Ieong <ihada at ufl.edu>
> Date: Wed, Nov 11, 2015 at 11:08 PM
> Subject: Re: [Homer-users] Atlas Viewer MC Processing Error
> To: homer-users at nmr.mgh.harvard.edu
>
>
> Ditto
>
> Sincerely,
> Hada
>
>
>
> On Thu, Nov 12, 2015 at 4:03 AM, <jdubb at nmr.mgh.harvard.edu> wrote:
>
>>
>> Hi Zeph,
>> Thanks for finding and posting the problem.
>>
>> Can you give the following details:
>>
>> a) Which Matlab version you are using
>> (or indicate if running released executable)?
>>
>> b) Version of AtlasViewer. Did you download the
>> latest developers version using SVN or the last
>> release?
>>
>> c) Platform are you running on (Windows,
>> Linux, Mac?)
>>
>> Thanks,
>> Jay
>>
>>
>>
>> > Hello All,
>> >
>> > I am trying to duplicate the Atlas Viewer Neurophotonics Tutorial,
>> Section
>> > 3.1.1 Simple Probe.
>> >
>> > I am able to first register the probe to the surface and can successfully
>> > manually generate the output files from the Forward Model, however when I
>> > try to proceed in Atlas Viewer and click that the MC App has finished, I
>> > receive this error.
>> >
>> > Index exceeds matrix dimensions.
>> >> Error in getFileDateStruct (line 26)
>> >> sec     = str2num(file.date(19:20));
>> >> Error in existMCOutput (line 78)
>> >>         d1(ii,iWav)=getFileDateStruct(filenameInputStruct);
>> >> Error in AtlasViewerGUI>menuItemGenerateMCInput_Callback (line 1431)
>> >> b = existMCOutput(sensitivity,probe,dirnameSubj);
>> >> Error in gui_mainfcn (line 96)
>> >>         feval(varargin{:});
>> >> Error in AtlasViewerGUI (line 43)
>> >>     gui_mainfcn(gui_State, varargin{:});
>> >> Error in
>> >>
>> @(hObject,eventdata)AtlasViewerGUI('menuItemGenerateMCInput_Callback',hObject,eventdata,guidata(hObject))
>> >>
>> >> Error while evaluating uimenu Callback
>> >
>> >
>> >  Once I receive this error, I cannot reload the probe and register it to
>> > the surface without receiving the same error.
>> >
>> > I also get the same results when I download the AtlasViewer.zip example
>> on
>> > the Homer2 website and follow the tutorial.
>> >
>> > Has anyone received this error and resolved it?
>> >
>> > Thanks,
>> >
>> > Zeph
>> >
>> > ______________________
>> > Kind Regards,
>> > *Zeph Phillips*
>> > *zeph.phillips at gmail.com* <zeph.phillips at gmail.com>
>> > _______________________________________________
>> > Homer-users mailing list
>> > Homer-users at nmr.mgh.harvard.edu
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>>
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