[Homer-users] AtlasViewer HbConc

[Jonathan Perry]

Working on the HbConc overlay on AtlasViewer

So in order to view the HbConc on AtlasViewer, you have a few things to
work out.

Run homer processing opt through the group level
The groupResults is saved automatically and will be needed.
You will need the digpts.nirs file as well as the groupResults.
Also make sure you have the SDunits in your nirs file in "mm" not "cm"

You will not have to run the monte carlo which you use for the sensitivity.
Keep in mind that each of the conditions and Hb species will automatically
have different scales, so if you are comparing them you may have to alter
the scales

If you have any trouble, I'm happy to answer.  I spent a lot of time digging

On Thu, Nov 10, 2016 at 6:14 PM, Jonathan Perry <walwynperry at gmail.com>
wrote:

> I have been working with the developer's version of HomER2 and
> AtlasViewer.  I am trying to get the HbO/HbR/HbT Conc as well as the HbConc
> overlay to work.
>
> I am in need of some help with the following.
> 1. I am trying to export HRF and have only been successful using the
> export Trace method.  This is fine, but unless I am mistaken, it means I
> have a different file per stimulus and it is now separate from the original
> digpts file which will be used by AtlasViewer
> 2. Once in AtlasViewer, I can't figure out how to incorporate the HRF or
> mean results into AtlasViewer.  I see that AtlasViewer relies on a struct
> called HbConc, but cannot find how to access this specifically.to show
> the HbConc overlay.
>
> What file or file format does AtlasViewer require to show the HbConc
> overlay?
>
> Any insight on the new feature would be more than appreciated.
> --
>
> Jonathan Perry
>
> Master's Student
>
> Department of Engineering Technology
>
> University of Houston
>
>  4734 Calhoun Rd., Room# 123
>
> Houston, TX 77204-4021
>
> Tel: (( <%28713%29%20743-4159>512)925-4910 <(512)%20925-4910>
>



-- 

Jonathan Perry

Master's Student

Department of Engineering Technology

University of Houston

 4734 Calhoun Rd., Room# 123

Houston, TX 77204-4021

Tel: ( <%28713%29%20743-4159>512)925-4910
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