[Homer-users] Homer-users Digest, Vol 104, Issue 5

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Good Afternoon Meryem,

Sure, I even tried it the Image recon function with a set of data that was provided by your lab (Ex7_Image_reconstruction/Image_recon_demo).



Here are the main steps I followed:

  1.  Loaded the folder containing the group and subject data from Matlab (Matlab 2018a and also 2017b)
  2.  Run AtlasViewerGUI
  3.  Chose Subject1 as an example
  4.  Registered atlas to dig pts and probe  to surface
  5.  Loaded the precalculate profile
  6.  Calculate the Image Metrics
  7.  Tried to load the Image Recon GUI (it does not load and it gives me the error).



As I mentioned before the update, the Image Recon GUI did at least open (however it did give me another error saying at least two wavelengths was needed, which I did not understand since the NIRS data included 2 wavelengths). Now the Image Recon GUI does not open at all.



Thank you Meryem



Alex

________________________________
From: homer-users-bounces at nmr.mgh.harvard.edu <homer-users-bounces at nmr.mgh.harvard.edu> on behalf of homer-users-request at nmr.mgh.harvard.edu <homer-users-request at nmr.mgh.harvard.edu>
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Subject: Homer-users Digest, Vol 104, Issue 5

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Today's Topics:

   1. Re: Image Recon error (Yucel, Meryem A.)


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Message: 1
Date: Thu, 9 Aug 2018 12:50:59 +0000
From: "Yucel, Meryem A." <MYUCEL at mgh.harvard.edu>
Subject: Re: [Homer-users] Image Recon error
To: "homer-users at nmr.mgh.harvard.edu"
        <homer-users at nmr.mgh.harvard.edu>
Message-ID:
        <DM5PR0401MB35101A4EC8505239B354E9DA9D250 at DM5PR0401MB3510.namprd04.prod.outlook.com>

Content-Type: text/plain; charset="us-ascii"

Could you tell the steps you take before getting this error (and necessary files if any) for us to reproduce the error?

Thanks,

Meryem

From: homer-users-bounces at nmr.mgh.harvard.edu [mailto:homer-users-bounces at nmr.mgh.harvard.edu] On Behalf Of Ads Free
Sent: Wednesday, August 8, 2018 4:30 PM
To: homer-users at nmr.mgh.harvard.edu
Subject: [Homer-users] Image Recon error


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Good afternoon,

I've been receiving this Matlab code error every time I use the Image Recon GUI option.

I recently updated AtlasViewer using the SVN option. I also cleared and reinstalled the path in matlab (previous version worked fine).

--------------------------------------------------
Reference to non-existent field 'name'.

Error in ImageRecon>ImageRecon_OpeningFcn (line 77)
set(handles.ListofSubjects,'String',imgrecon.subjData.name);

Error in gui_mainfcn (line 220)
    feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});

Error in ImageRecon (line 42)
    gui_mainfcn(gui_State, varargin{:});

Error in AtlasViewerGUI>menuItemImageReconGUI_Callback (line 3303)
ImageRecon();

Error in gui_mainfcn (line 95)
        feval(varargin{:});

Error in AtlasViewerGUI (line 19)
    gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)AtlasViewerGUI('menuItemImageReconGUI_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating Menu Callback.

--------------------------------------------------

Thank you
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