[Homer-users] The new Homer (v. 2.3) {Disarmed}

[Atyabi, Adham]

Hi Yogev

With respect to your group HRF problem, my understanding is that when you do run your process as a group, Homer will generate groupResults.mat file. This file has all the input, output, and processes performed on each member of your group and also it contains the group results (either as block average or GLM based on what your process configuration is). In this file, “group.procResult” is what you are looking for and you can extract your subject level data from “group.subjs”

I hope this helps

Adham Atyabi, Ph.D.
Technology Lead | Seattle Children’s Innovation & Technology Lab (SCITL)
Seattle Children's
Senior Postdoctoral Fellow, Imaging & Visualization | Center for Child Health, Behavior & Dev. (CCHBD)
University of Washington
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206-985-3365 FAX
aatyabi at uw.edu<mailto:aatyabi at uw.edu>
Adham.atyabi at seattlechildrens.org<mailto:Adham.atyabi at seattlechildrens.org>
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From: homer-users-bounces at nmr.mgh.harvard.edu [mailto:homer-users-bounces at nmr.mgh.harvard.edu] On Behalf Of Jörn M. Horschig
Sent: Thursday, February 15, 2018 11:47 PM
To: homer-users at nmr.mgh.harvard.edu
Subject: Re: [Homer-users] The new Homer (v. 2.3)

Hi Yogev,

Re 1) This could have to do with our conversion script. It probably has to do with the order of wavelengths, as Homer now requires them to be ordered in ascending order. I updated our script recently to fix this. I will contact you privately about the new script.

Re 2) I do not know by heart, I hope someone else knows. If you do not get a response within the next week, feel free to ask me again and I will check.

With best regards,
Jörn



--
Jörn M. Horschig, PhD, Software Engineer & Project Leader NeuroGuard XS
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From: homer-users-bounces at nmr.mgh.harvard.edu<mailto:homer-users-bounces at nmr.mgh.harvard.edu> [mailto:homer-users-bounces at nmr.mgh.harvard.edu] On Behalf Of Yogev Koren
Sent: Thursday, February 15, 2018 18:05
To: homer-users at nmr.mgh.harvard.edu<mailto:homer-users at nmr.mgh.harvard.edu>
Subject: [Homer-users] The new Homer (v. 2.3)

Hey everyone
I have two questions:
1) it seems the new version replaced Hbo values with the Hbr and vice versa in my data. my original files are .oxy (Artinis) that were converted to .nirs files and worked fine with the old version of Homer (2.1). is anyone familiar with such a problem and/or solution?
2) is there a way to export the group HRF and not just the HRF of each subject?

Thanks
Yogev

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