[Mne_analysis] map between sources and voxels
Gustavo Sudre
gsudre at pobox.com
Thu Dec 3 11:31:06 EST 2009
Hello all,
Thank you again for the good discussing on that previous issue. Now I
have a more MNE-specific question.
Suppose I run compute_mne_raw_inverse using a single label (e.g.
cortex-lh.label), and then convert the output of that function to
a .mat file using mne_raw2mat. In the resulting .mat file I see a
[channels] by [time] matrix with data, which makes sense. Judging by
the number of channels, I imagine they map to the sources within that
label, and not the vertices. Then, in the info structure there are
names for all these channels, and if I understand it correctly that
contains the number of the vertex that the source maps to. In that
case, is there a 1-1 relationship between sources and vertices? That
would mean that there's an awful lot of quiet voxels in the results
(e.g. given the ~3000 sources I get in the left hemisphere, using 7mm
spacing, and 160K vertices being indexed). Shouldn't a given source
affect more than one vertex in the brain, if the triangles are small
enough?
I guess my question boils down to the definition and relationship
between vertices and sources. Please let me know if I'm mistaken in my
line of thought.
Thanks,
Gus
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