[Mne_analysis] again mne_surf2_bem problem

Elisabeth Fonteneau elisabeth.fonteneau at mrc-cbu.cam.ac.uk
Tue Mar 10 07:39:25 EDT 2009
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Dear all,

I am in the process of aligning MRI-MEG, and for some of my participants 
(3 out of 22), I failed to create the output file with mne_surf2bem

below is the message error

*****************
Running mne_surf2bem on l18
mne_surf2bem version 1.4 compiled at Apr  5 2007 16:04:15
input  file #   1 : /imaging/ef02/lexpro/subject/0327/surf/lh.smseghead 
/ id = 4 / sigma N/A
output file       : /imaging/ef02/lexpro/subject/0327/bem/0327-head.fif
New quad file : nvert = 193696 nquad = 193927
        Triangle and vertex normals and neighboring triangles...[done]
        Vertex neighbors...Too many neighbors for vertex 94524.
******************

One of my colleague here told me that it happened also for her and then 
she tried to re-run the mkheadsurf command
and then the mne_surf2_bem

I tryied that with no luck
I also try to re-run the last step of recon-all -autorecon3 on 
freesurfer to be sure that the output was not corrupted, again no success

Any advices would be appreciated

Elisabeth


-- 
**********************
Dr Elisabeth Fonteneau
MRC Cognition and Brain Sciences Unit
15 Chaucer Road
Cambridge CB2 7EF
England
Tel:  +44 (0)1223 355294 (extension 263)
Fax:  +44 (0)1223 359062 

Email: elisabeth.fonteneau at mrc-cbu.cam.ac.uk
Web: http://www.mrc-cbu.cam.ac.uk/people/elisabeth.fonteneau/
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