[Mne_analysis] mne_epochs2mat error

conrad at nmr.mgh.harvard.edu conrad at nmr.mgh.harvard.edu
Tue Nov 1 13:01:59 EDT 2011
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Dear MNE Analyzers,

I'm still trying to figure out why my per trial values are not making
sense, but while running mne_epochs2mat I have come across more problems.

This is the whole error trace. I've gotten this error on the stable and
nightly builds.

- Conrad

*** glibc detected ***
/usr/pubsw/packages/mne/stable/bin/mne_epochs2mat.bin: double free or
corruption (out): 0x0000000010e11760 ***
======= Backtrace: =========
/lib64/libc.so.6[0x31f967230f]
/lib64/libc.so.6(cfree+0x4b)[0x31f967276b]
/usr/pubsw/packages/mne/stable/bin/mne_epochs2mat.bin(mne_free_name_list+0x5e)[0x418d9e]
/usr/pubsw/packages/mne/stable/bin/mne_epochs2mat.bin(main+0x19f)[0x40d0bf]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x31f961d994]
/usr/pubsw/packages/mne/stable/bin/mne_epochs2mat.bin[0x40b54a]
======= Memory map: ========
00400000-004b8000 r-xp 00000000 00:1e 11388138                          
/autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/mne/MNE-2.7.0-3103-Linux-x86_64/bin/mne_epochs2mat.bin
005b7000-005ba000 rw-p 000b7000 00:1e 11388138                          
/autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/mne/MNE-2.7.0-3103-Linux-x86_64/bin/mne_epochs2mat.bin
005ba000-005cd000 rw-p 005ba000 00:00 0
10d79000-10f7e000 rw-p 10d79000 00:00 0                                 
[heap]
31f9200000-31f921c000 r-xp 00000000 08:02 781828                        
/lib64/ld-2.5.so
31f941b000-31f941c000 r--p 0001b000 08:02 781828                        
/lib64/ld-2.5.so
31f941c000-31f941d000 rw-p 0001c000 08:02 781828                        
/lib64/ld-2.5.so
31f9600000-31f974e000 r-xp 00000000 08:02 781835                        
/lib64/libc-2.5.so
31f974e000-31f994d000 ---p 0014e000 08:02 781835                        
/lib64/libc-2.5.so
31f994d000-31f9951000 r--p 0014d000 08:02 781835                        
/lib64/libc-2.5.so
31f9951000-31f9952000 rw-p 00151000 08:02 781835                        
/lib64/libc-2.5.so
31f9952000-31f9957000 rw-p 31f9952000 00:00 0
31f9a00000-31f9a82000 r-xp 00000000 08:02 781843                        
/lib64/libm-2.5.so
31f9a82000-31f9c81000 ---p 00082000 08:02 781843                        
/lib64/libm-2.5.so
31f9c81000-31f9c82000 r--p 00081000 08:02 781843                        
/lib64/libm-2.5.so
31f9c82000-31f9c83000 rw-p 00082000 08:02 781843                        
/lib64/libm-2.5.so
31f9e00000-31f9e02000 r-xp 00000000 08:02 781839                        
/lib64/libdl-2.5.so
31f9e02000-31fa002000 ---p 00002000 08:02 781839                        
/lib64/libdl-2.5.so
31fa002000-31fa003000 r--p 00002000 08:02 781839                        
/lib64/libdl-2.5.so
31fa003000-31fa004000 rw-p 00003000 08:02 781839                        
/lib64/libdl-2.5.so
31fa200000-31fa216000 r-xp 00000000 08:02 781845                        
/lib64/libpthread-2.5.so
31fa216000-31fa415000 ---p 00016000 08:02 781845                        
/lib64/libpthread-2.5.so
31fa415000-31fa416000 r--p 00015000 08:02 781845                        
/lib64/libpthread-2.5.so
31fa416000-31fa417000 rw-p 00016000 08:02 781845                        
/lib64/libpthread-2.5.so
31fa417000-31fa41b000 rw-p 31fa417000 00:00 0
31fde00000-31fde07000 r-xp 00000000 08:02 781854                        
/lib64/librt-2.5.so
31fde07000-31fe007000 ---p 00007000 08:02 781854                        
/lib64/librt-2.5.so
31fe007000-31fe008000 r--p 00007000 08:02 781854                        
/lib64/librt-2.5.so
31fe008000-31fe009000 rw-p 00008000 08:02 781854                        
/lib64/librt-2.5.so
2b3b54ccb000-2b3b54cce000 rw-p 2b3b54ccb000 00:00 0
2b3b54cf9000-2b3b54d12000 r-xp 00000000 00:1e 15189254                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libmat.so
2b3b54d12000-2b3b54e12000 ---p 00019000 00:1e 15189254                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libmat.so
2b3b54e12000-2b3b54e17000 rw-p 00019000 00:1e 15189254                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libmat.so
2b3b54e17000-2b3b54e18000 rw-p 2b3b54e17000 00:00 0
2b3b54e18000-2b3b54e6e000 r-xp 00000000 00:1e 15189404                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libmx.so
2b3b54e6e000-2b3b54f6d000 ---p 00056000 00:1e 15189404                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libmx.so
2b3b54f6d000-2b3b54f7c000 rw-p 00055000 00:1e 15189404                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libmx.so
2b3b54f7c000-2b3b5500c000 r-xp 00000000 00:1e 15189426                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libut.so
2b3b5500c000-2b3b5510c000 ---p 00090000 00:1e 15189426                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libut.so
2b3b5510c000-2b3b5512f000 rw-p 00090000 00:1e 15189426                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libut.so
2b3b5512f000-2b3b55445000 rw-p 2b3b5512f000 00:00 0
2b3b55445000-2b3b55552000 r-xp 00000000 00:1e 15189246                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libhdf5.so.0.0.0
2b3b55552000-2b3b55651000 ---p 0010d000 00:1e 15189246                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libhdf5.so.0.0.0
2b3b55651000-2b3b55663000 rw-p 0010c000 00:1e 15189246                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libhdf5.so.0.0.0
2b3b55663000-2b3b55664000 rw-p 2b3b55663000 00:00 0
2b3b55664000-2b3b55731000 r-xp 00000000 00:1e 9521433                   
/autofs/space/lyon_006/pubsw/common/matlab/7.4/sys/os/glnxa64/libstdc++.so.6.0.8
2b3b55731000-2b3b55831000 ---p 000cd000 00:1e 9521433                   
/autofs/space/lyon_006/pubsw/common/matlab/7.4/sys/os/glnxa64/libstdc++.so.6.0.8
2b3b55831000-2b3b55852000 rw-p 000cd000 00:1e 9521433                   
/autofs/space/lyon_006/pubsw/common/matlab/7.4/sys/os/glnxa64/libstdc++.so.6.0.8
2b3b55852000-2b3b55866000 rw-p 2b3b55852000 00:00 0
2b3b55866000-2b3b55872000 r-xp 00000000 00:1e 9521430                   
/autofs/space/lyon_006/pubsw/common/matlab/7.4/sys/os/glnxa64/libgcc_s.so.1
2b3b55872000-2b3b55971000 ---p 0000c000 00:1e 9521430                   
/autofs/space/lyon_006/pubsw/common/matlab/7.4/sys/os/glnxa64/libgcc_s.so.1
2b3b55971000-2b3b55973000 rw-p 0000b000 00:1e 9521430                   
/autofs/space/lyon_006/pubsw/common/matlab/7.4/sys/os/glnxa64/libgcc_s.so.1
2b3b55973000-2b3b55974000 r-xp 00000000 00:1e 15189248                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicudata.so.32.0
2b3b55974000-2b3b55a73000 ---p 00001000 00:1e 15189248                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicudata.so.32.0
2b3b55a73000-2b3b55a74000 rw-p 00000000 00:1e 15189248                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicudata.so.32.0
2b3b55a74000-2b3b55a75000 rw-p 2b3b55a74000 00:00 0
2b3b55a75000-2b3b55b55000 r-xp 00000000 00:1e 15189251                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicuuc.so.32.0
2b3b55b55000-2b3b55c54000 ---p 000e0000 00:1e 15189251                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicuuc.so.32.0
2b3b55c54000-2b3b55c61000 rw-p 000df000 00:1e 15189251                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicuuc.so.32.0
2b3b55c61000-2b3b55c62000 rw-p 2b3b55c61000 00:00 0
2b3b55c62000-2b3b55d83000 r-xp 00000000 00:1e 15189249                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicui18n.so.32.0
2b3b55d83000-2b3b55e82000 ---p 00121000 00:1e 15189249                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicui18n.so.32.0
2b3b55e82000-2b3b55e8b000 rw-p 00120000 00:1e 15189249                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicui18n.so.32.0
2b3b55e8b000-2b3b55e95000 r-xp 00000000 00:1e 15189250                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicuio.so.32.0
2b3b55e95000-2b3b55f95000 ---p 0000a000 00:1e 15189250                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicuio.so.32.0
2b3b55f95000-2b3b55f97000 rw-p 0000a000 00:1e 15189250                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libicuio.so.32.0
2b3b55f97000-2b3b55f98000 rw-p 2b3b55f97000 00:00 0
2b3b55f98000-2b3b55fa4000 r-xp 00000000 00:1e 15189432                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libz.so.1.1.4
2b3b55fa4000-2b3b560a4000 ---p 0000c000 00:1e 15189432                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libz.so.1.1.4
2b3b560a4000-2b3b560a7000 rw-p 0000c000 00:1e 15189432                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/libz.so.1.1.4
2b3b560a7000-2b3b560aa000 rw-p 2b3b560a7000 00:00 0
2b3b560aa000-2b3b569fc000 r--s 00000000 00:1e 15189224                  
/autofs/space/lyon_006/pubsw/common/matlab/7.4/bin/glnxa64/icudt32l.dat
2b3b569fc000-2b3b56b3d000 rw-p 2b3b569fc000 00:00 0
2b3b56c22000-2b3b56c23000 rw-p 2b3b56c22000 00:00 0
2b3b62322000-2b3b658ef000 r--p 00000000 08:02 1749734                   
/usr/lib/locale/locale-archive
7fff8062f000-7fff80643000 rwxp 7ffffffe8000 00:00 0                     
[stack]
7fff80644000-7fff80645000 rw-p 7fffffffd000 00:00 0
ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0                 
[vdso]
/usr/pubsw/packages/mne/stable/bin/mne_epochs2mat: line 68: 15959 Aborted 
               $MNE_ROOT/bin/mne_epochs2mat.bin $*
I18N Runtime Warning:
	Missing ICU data file detected while processing $(MATLAB)/bin/$(ARCH).
	Hint: Check for a misconfigured environment or installation.

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