[Mne_analysis] MRI problem with head reconstruction

[santosh at nmr.mgh.harvard.edu]

Hello,

     I have a MRI subject, where once we performed reconstruction, the
brain came out fine, but the outer skin was not properly
reconstructed. I tried using mri_watershed to manually add control
points in order to try to rectify this problem, with no luck. Here is
the command.


mri_watershed -atlas -s 114 164 45 -s 59 164 171 -s 66 198 171 -s 83 228
169 -s 81 228 158 -s 68 77 158 -s 68 108 65 -s 68 126 68 -s 68 141 71 -s
193 142 72 -s 193 150 76 -s 102 149 43 -s 114 159 43 -s 163 160 47 -s 87
120 47 -s 87 106 47 -s 88 96 47 -s 140 44 83 -s 58 100 83 -s 58 138 93 -s
183 63 128 -s 111 42 124 -s 51 118 124 -useSRAS -surf outer_skin_surface
-brainsurf 059501  
/autofs/space/calvin_001/marvin/1/users/MRI/WMA/recons/059501/mri/T1.mgz 
/autofs/space/calvin_001/marvin/1/users/MRI/WMA/recons/059501/bem/watershed/ws


Does anyone have any ideas how to fix this problem? This is my first time
doing this, so feel free to point out anything obvious that I might have
missed. Thank you.

-- Santosh