[Mne_analysis] mne_organize_dicom

Alexandre Gramfort gramfort at nmr.mgh.harvard.edu
Tue Mar 6 15:40:10 EST 2012
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hi Dan,

I have personally never used it but if you find a glitch in the doc you
should be able to fix it via github. Ask martin for example if you need help.

Alex

On Tue, Mar 6, 2012 at 7:54 PM, dgw <dgwakeman at gmail.com> wrote:
> Hello,
>
> I am using the current "Stable version"
> more /usr/pubsw/packages/mne/stable/VERSION
> ====  MNE Software Package ====
>
> Version 2.7.0
> SVN revision 3103
> Build date is Tue Dec 15 08:46:00 EST 2009
>
> Copyright © 2009 Matti Hamalainen
> Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
> Boston, Massachusetts, USA
>
> I have tried to use the mne_organize_dicom function on the following
> directory of dicom files:
>
> mne_organize_dicom
> /cluster/archive/297/siemens/TrioTim-35006-20120203-150449-440000
>
> The output seems strange:
>
> ls -l 001_localizer/*
> total 24
> lrwxrwxrwx 1 dwakeman pls 96 Mar  6 13:34 364000-000001-000001.dcm ->
> ../..//cluster/archive/297/siemens/TrioTim-35006-20120203-150449-440000/364000-000001-000001.dcm
> lrwxrwxrwx 1 dwakeman pls 96 Mar  6 13:40 364000-000001-000002.dcm ->
> ../..//cluster/archive/297/siemens/TrioTim-35006-20120203-150449-440000/364000-000001-000002.dcm
> lrwxrwxrwx 1 dwakeman pls 96 Mar  6 13:35 364000-000001-000003.dcm ->
> ../..//cluster/archive/297/siemens/TrioTim-35006-20120203-150449-440000/364000-000001-000003.dcm
>
> These symbolic links are not correct. Why is MNE producing relative
> symbolic links?
>
> I believe, from the instructions here:
> http://www.martinos.org/mne/manual/AppA.html
> that the way I am using this should function. Am I missing something?
> This is my first time using it, sorry for any confusion.
>
> D
>
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