[Mne_analysis] Mne_analysis Digest, Vol 67, Issue 11

Teon Brooks teon at nyu.edu
Thu Aug 22 15:20:07 EDT 2013
Search archives: 
Hey,

I wouldn't mind working on a converter for EDF in python.

Best,
--
teon

Teon Brooks, Pre-hD
Graduate Student in psycholinguistics
NSF Fellow
teon at nyu.edu



On Thu, Aug 22, 2013 at 12:00 PM,
<mne_analysis-request at nmr.mgh.harvard.edu>wrote:

> Send Mne_analysis mailing list submissions to
>         mne_analysis at nmr.mgh.harvard.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
>         https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
> or, via email, send a message with subject or body 'help' to
>         mne_analysis-request at nmr.mgh.harvard.edu
>
> You can reach the person managing the list at
>         mne_analysis-owner at nmr.mgh.harvard.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Mne_analysis digest..."
>
>
> Today's Topics:
>
>    1. mne_edf2fiff available in mne-python? (Grace Leslie)
>    2. Re: mne_edf2fiff available in mne-python? (Hari Bharadwaj)
>    3. Re: mne_edf2fiff available in mne-python? (Alexandre Gramfort)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 21 Aug 2013 12:11:25 -0700
> From: "Grace Leslie" <grace.leslie at syntrogi.com>
> Subject: [Mne_analysis] mne_edf2fiff available in mne-python?
> To: <mne_analysis at nmr.mgh.harvard.edu>
> Message-ID: <004201ce9ea2$3e482890$bad879b0$@syntrogi.com>
> Content-Type: text/plain; charset="us-ascii"
>
> Dear MNE list,
>
>
>
> I am new to both Python programming and MNE, and haven't been able to find
> out the answer to my question in the MNE Python documentation.
>
>
>
> Specifically, I am trying to import an EDF file into the FIFF format so
> that
> I can use the other MNE functions.
>
>
>
> I have found the mne_edf2fiff function referenced here:
> http://martinos.org/mne/manual/convert.html?highlight=mne_edf2fiff
>
>
>
> I cannot figure out how to incorporate this function into my Python script:
> is it available for use in the python environment? I'd be very grateful to
> see a starter python script that shows how to reference this function, or
> to
> be pointed to a section of the documentation that discusses using these
> functions.
>
>
>
> Best wishes,
>
>
>
> Grace Leslie
>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL:
> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20130821/e0fac1ce/attachment-0001.html
>
> ------------------------------
>
> Message: 2
> Date: Wed, 21 Aug 2013 23:05:18 -0400
> From: Hari Bharadwaj <hari at nmr.mgh.harvard.edu>
> Subject: Re: [Mne_analysis] mne_edf2fiff available in mne-python?
> To: Grace Leslie <grace.leslie at syntrogi.com>
> Cc: "<mne_analysis at nmr.mgh.harvard.edu>"
>         <mne_analysis at nmr.mgh.harvard.edu>
> Message-ID: <D649CFCA-47A0-407E-B227-32C933F08D3E at nmr.mgh.harvard.edu>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Grace,
>    I have been using the native version of mne_edf2fiff for the one time
> initial conversion (from Biosemi bdf format EEG data).. From then on,  the
> python toolbox functions take over starting with mne.fiff.Raw(.).
>
> I don't think there is a python version of the conversion routine (I could
> be wrong)..
>
> HTH,
> Hari
>
> Hari Bharadwaj
> PhD Candidate, Biomedical Engineering,
> Auditory Neuroscience Laboratory
> Boston University, Boston, MA 02215
>
> Martinos Center for Biomedical Imaging,
> Massachusetts General Hospital
> Charlestown, MA 02129
>
> hari at nmr.mgh.harvard.edu
> Ph: 734-883-5954
>
> On Aug 21, 2013, at 3:11 PM, "Grace Leslie" <grace.leslie at syntrogi.com>
> wrote:
>
> > Dear MNE list,
> >
> > I am new to both Python programming and MNE, and haven?t been able to
> find out the answer to my question in the MNE Python documentation.
> >
> > Specifically, I am trying to import an EDF file into the FIFF format so
> that I can use the other MNE functions.
> >
> > I have found the mne_edf2fiff function referenced here:
> http://martinos.org/mne/manual/convert.html?highlight=mne_edf2fiff
> >
> > I cannot figure out how to incorporate this function into my Python
> script: is it available for use in the python environment? I?d be very
> grateful to see a starter python script that shows how to reference this
> function, or to be pointed to a section of the documentation that discusses
> using these functions.
> >
> > Best wishes,
> >
> > Grace Leslie
> > _______________________________________________
> > Mne_analysis mailing list
> > Mne_analysis at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL:
> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20130821/bb15b7ee/attachment-0001.html
>
> ------------------------------
>
> Message: 3
> Date: Thu, 22 Aug 2013 09:20:57 +0200
> From: Alexandre Gramfort <alexandre.gramfort at telecom-paristech.fr>
> Subject: Re: [Mne_analysis] mne_edf2fiff available in mne-python?
> To: Hari Bharadwaj <hari at nmr.mgh.harvard.edu>
> Cc: "<mne_analysis at nmr.mgh.harvard.edu>"
>         <mne_analysis at nmr.mgh.harvard.edu>,     Grace Leslie
>         <grace.leslie at syntrogi.com>
> Message-ID:
>         <
> CADeotZr5FW+0aqpq5e4TjQRrZhQBke8_iWVFs8GsFQbjg+m-Ew at mail.gmail.com>
> Content-Type: text/plain; charset=windows-1252
>
> hi Grace,
>
> Hari's correct. You'll need to convert your data using mne_edf2fiff as
> there is no
> Python reader for EDF files. If there is any volunteer to implement such
> a reader please contact us.
>
> To download the MNE unix commands go to:
>
> http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/MNE_register/
>
> I recommend you download the nightly build for your system.
>
> Best,
> Alex
>
> On Thu, Aug 22, 2013 at 5:05 AM, Hari Bharadwaj
> <hari at nmr.mgh.harvard.edu> wrote:
> > Hi Grace,
> >    I have been using the native version of mne_edf2fiff for the one time
> > initial conversion (from Biosemi bdf format EEG data).. From then on,
>  the
> > python toolbox functions take over starting with mne.fiff.Raw(.).
> >
> > I don't think there is a python version of the conversion routine (I
> could
> > be wrong)..
> >
> > HTH,
> > Hari
> >
> > Hari Bharadwaj
> > PhD Candidate, Biomedical Engineering,
> > Auditory Neuroscience Laboratory
> > Boston University, Boston, MA 02215
> >
> > Martinos Center for Biomedical Imaging,
> > Massachusetts General Hospital
> > Charlestown, MA 02129
> >
> > hari at nmr.mgh.harvard.edu
> > Ph: 734-883-5954
> >
> > On Aug 21, 2013, at 3:11 PM, "Grace Leslie" <grace.leslie at syntrogi.com>
> > wrote:
> >
> > Dear MNE list,
> >
> >
> >
> > I am new to both Python programming and MNE, and haven?t been able to
> find
> > out the answer to my question in the MNE Python documentation.
> >
> >
> >
> > Specifically, I am trying to import an EDF file into the FIFF format so
> that
> > I can use the other MNE functions.
> >
> >
> >
> > I have found the mne_edf2fiff function referenced here:
> > http://martinos.org/mne/manual/convert.html?highlight=mne_edf2fiff
> >
> >
> >
> > I cannot figure out how to incorporate this function into my Python
> script:
> > is it available for use in the python environment? I?d be very grateful
> to
> > see a starter python script that shows how to reference this function,
> or to
> > be pointed to a section of the documentation that discusses using these
> > functions.
> >
> >
> >
> > Best wishes,
> >
> >
> >
> > Grace Leslie
> >
> > _______________________________________________
> > Mne_analysis mailing list
> > Mne_analysis at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
> >
> >
> > _______________________________________________
> > Mne_analysis mailing list
> > Mne_analysis at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
> >
> >
> > The information in this e-mail is intended only for the person to whom
> it is
> > addressed. If you believe this e-mail was sent to you in error and the
> > e-mail
> > contains patient information, please contact the Partners Compliance
> > HelpLine at
> > http://www.partners.org/complianceline . If the e-mail was sent to you
> in
> > error
> > but does not contain patient information, please contact the sender and
> > properly
> > dispose of the e-mail.
> >
>
>
>
> ------------------------------
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>
> End of Mne_analysis Digest, Vol 67, Issue 11
> ********************************************
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20130822/d06eb4af/attachment.html

More information about the Mne_analysis mailing list