[Mne_analysis] mne_edf2fiff available in mne-python?

Denis A. Engemann denis.engemann at gmail.com
Tue Aug 27 19:29:11 EDT 2013
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Hi Grace,

as long as we don't have the EDF reader in Python and if you want to move on quickly you might want to install the mne command line tools on a virtual machine, e. g., Neurodebian:  http://neuro.debian.net/

Don't hesitate to contact me if you have questions regarding this.

Cheers,
Denis


On 22.08.2013, at 09:20, Alexandre Gramfort <alexandre.gramfort at telecom-paristech.fr> wrote:

> hi Grace,
> 
> Hari's correct. You'll need to convert your data using mne_edf2fiff as
> there is no
> Python reader for EDF files. If there is any volunteer to implement such
> a reader please contact us.
> 
> To download the MNE unix commands go to:
> 
> http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/MNE_register/
> 
> I recommend you download the nightly build for your system.
> 
> Best,
> Alex
> 
> On Thu, Aug 22, 2013 at 5:05 AM, Hari Bharadwaj
> <hari at nmr.mgh.harvard.edu> wrote:
>> Hi Grace,
>>   I have been using the native version of mne_edf2fiff for the one time
>> initial conversion (from Biosemi bdf format EEG data).. From then on,  the
>> python toolbox functions take over starting with mne.fiff.Raw(.).
>> 
>> I don't think there is a python version of the conversion routine (I could
>> be wrong)..
>> 
>> HTH,
>> Hari
>> 
>> Hari Bharadwaj
>> PhD Candidate, Biomedical Engineering,
>> Auditory Neuroscience Laboratory
>> Boston University, Boston, MA 02215
>> 
>> Martinos Center for Biomedical Imaging,
>> Massachusetts General Hospital
>> Charlestown, MA 02129
>> 
>> hari at nmr.mgh.harvard.edu
>> Ph: 734-883-5954
>> 
>> On Aug 21, 2013, at 3:11 PM, "Grace Leslie" <grace.leslie at syntrogi.com>
>> wrote:
>> 
>> Dear MNE list,
>> 
>> 
>> 
>> I am new to both Python programming and MNE, and haven’t been able to find
>> out the answer to my question in the MNE Python documentation.
>> 
>> 
>> 
>> Specifically, I am trying to import an EDF file into the FIFF format so that
>> I can use the other MNE functions.
>> 
>> 
>> 
>> I have found the mne_edf2fiff function referenced here:
>> http://martinos.org/mne/manual/convert.html?highlight=mne_edf2fiff
>> 
>> 
>> 
>> I cannot figure out how to incorporate this function into my Python script:
>> is it available for use in the python environment? I’d be very grateful to
>> see a starter python script that shows how to reference this function, or to
>> be pointed to a section of the documentation that discusses using these
>> functions.
>> 
>> 
>> 
>> Best wishes,
>> 
>> 
>> 
>> Grace Leslie
>> 
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