[Mne_analysis] mne_analyze surface viewer error

[Martin Luessi]

Hi Vincent,

I assume this problem happens with your own data not for with the sample 
data set, correct? Did you check the FreeSurfer segmentation? It looks 
to me like FreeSurfer failed for some reason. Here are some instructions 
on how to check the FS output:

http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData

I hope this helps.

Martin

On 02/04/13 19:55, Vincent Rupp wrote:
> Hello,
>
> I am using mne_analyze to align MEG/MRI coordinates in accordance with
> the instructions at
> http://www.martinos.org/mne/manual/sampledata.html#chdijbig. However I
> am having an issue with some of the way my inflated surfaces appear when
> displayed in the viewer. I've attached two examples of some particularly
> bad ones, and the third attachment is an example of what the inflated
> surface looks like ordinarily. This third image is the same surface as
> the first one that looks like a block. At what point in processing is my
> workflow going wrong? Thanks in advance.
>
> Best wishes,
>
> Vincent Rupp
>
>
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-- 
Martin Luessi, Ph.D.

Research Fellow

Department of Radiology
Athinoula A. Martinos Center for Biomedical Imaging
Massachusetts General Hospital
Harvard Medical School
149 13th Street
Charlestown, MA 02129

Fax: +1 617 726-7422