[Mne_analysis] example code about overlaying .w file on the inflated brain surface.

[sheraz at nmr.mgh.harvard.edu]

atleast brain.add_contour_overlay support mgz which I used.

> On 03/20/13 21:32, sheraz at nmr.mgh.harvard.edu wrote:
>> I used mri_surf2surf(freesurfer) to convert w file to mgz file, mgz
>> worked
>>   with mne-python
>
> As far as I know, MNE-Python cannot read .mgz surface files. To show a
> .w file on an inflated surface you can do (assuming you have
> activity-lh.w and activity-rh.w):
>
> stc = mne.read_source_estimate('activity')
> stc.plot(subject=subject, subjects_dir=subjects_dir, hemi='lh')
>
> The first call will read both .w files and the second will show the
> activity on the left hemisphere. Note you need MNE-Python 0.6 or newer
> for this.
>
> I hope this helps,
>
> Martin
>
>>
>>> Hi MNEers,
>>>
>>>
>>> I can overlay a .w file on the inflated brain surface in classical
>>> MNE-analyze GUI.
>>> Now I try to use mne-python.
>>>
>>>
>>> Anyone have a quick code about how to load a .w file and overlaying it
>>> on
>>> the inflated brain surface?
>>> The expected results should look like this,
>>>
>>>
>>>
>>> If  you can not see above pic, please open the attachment to have a
>>> look.
>>> Thanks in advance.
>>>
>>>
>>> Best,
>>> Junpeng_______________________________________________
>>> Mne_analysis mailing list
>>> Mne_analysis at nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>>
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>>
>
>
> --
> Martin Luessi, Ph.D.
>
> Research Fellow
>
> Department of Radiology
> Athinoula A. Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
> Harvard Medical School
> 149 13th Street
> Charlestown, MA 02129
>
> Fax: +1 617 726-7422
>
>
>