[Mne_analysis] Dicom organization

Alexandre Gramfort alexandre.gramfort at telecom-paristech.fr
Mon Aug 4 17:11:16 EDT 2014
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> # Make high resolution head surface
> HEAD_FNAME=${SUBJECTS_DIR}/${SUBJECT}/bem/${SUBJECT}-head.fif
> if [ ! -f ${HEAD_FNAME} ];
> then
>     mkheadsurf -s ${SUBJECT}
>     mne_surf2bem --surf ${SUBJECTS_DIR}/${SUBJECT}/surf/lh.seghead --id 4
> --check --fif ${HEAD_FNAME}
> fi
>
> # Setup BEM
>
> to create the head surface. Or do I have to create the boundaries?

this sets up the head surface for coregistration with mne_analyze.
It will not be used for forward modeling but just to create the -trans.fif file.

Try what denis suggests if this does not succeed for you.

Alex



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