[Mne_analysis] Dicom organization

[Isaiah C. Smith]

Thanks so much for the help but sorry,
I looked at the Python, but I am not really familiar with the format and having a hard time determining how to implement it. The lab I am working in primarily uses MATLAB. Is there a way to form models in MATLAB or the terminal along the same lines as the python attachment? And does the creation of a brain model follow the same procedures as the scalp and skull?
Isaiah
On Aug 4, 2014, at 2:11 PM, Alexandre Gramfort <alexandre.gramfort at telecom-paristech.fr> wrote:

>> # Make high resolution head surface
>> HEAD_FNAME=${SUBJECTS_DIR}/${SUBJECT}/bem/${SUBJECT}-head.fif
>> if [ ! -f ${HEAD_FNAME} ];
>> then
>>    mkheadsurf -s ${SUBJECT}
>>    mne_surf2bem --surf ${SUBJECTS_DIR}/${SUBJECT}/surf/lh.seghead --id 4
>> --check --fif ${HEAD_FNAME}
>> fi
>> 
>> # Setup BEM
>> 
>> to create the head surface. Or do I have to create the boundaries?
> 
> this sets up the head surface for coregistration with mne_analyze.
> It will not be used for forward modeling but just to create the -trans.fif file.
> 
> Try what denis suggests if this does not succeed for you.
> 
> Alex
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