[Mne_analysis] invalid encoding mne_setup_source_space

[Alexandre Gramfort]

hi,

let us know if Kam's answer helps or not.

Best,
Alex

On Wed, Aug 6, 2014 at 11:48 PM, Konstantina Kalogianni
<K.Kalogianni at tudelft.nl> wrote:
> Dear MNE community,
>
>
>
> I am new in using MNE and I have a question that relates to invalid
> encoding.
>
>
>
> I am having  a  problem with the use of the function mne_setup_source_space.
>
>
>
> Let me explain how I reached to the error: after running freesurfer
> (installed on linux on virtual box) on one of my MRI scans I have installed
> mne  with the following commands:
>
> export MNE_ROOT=<MNE directory>
>
> cd $MNE_ROOT/bin
>
> . ./mne_setup_sh
>
> This was completed without an error.
>
>
>
> Then I have set my subjects’ directory with:
>
> export SUBJECTS_DIR=<MNE ANALYSIS DIR>/subjects
>
> export SUBJECT=<subject's name>
>
>
>
> Then I run:  mne_setup_source_space --ico -6 and it produces the following
> error.:
>
>
>
>>>> 1. Creating the source space file
>>>> /usr/local/freesurfer/mne/MNE-2.7.0-3106-Linux-x86_64/subjects/teo/bem/teo-oct-6-src.fif...
>
> /usr/local/freesurfer/mne/MNE-2.7.0-3106-Linux-x86_64/bin/mne_make_source_space:
> 2:
> /usr/local/freesurfer/mne/MNE-2.7.0-3106-Linux-x86_64/bin/mne_make_source_space:
> Syntax error: Unterminated quoted string
>
> Source space creation failed
>
> /usr/local/freesurfer/mne/MNE-2.7.0-3106-Linux-x86_64/bin/mne_make_source_space:
> 1:
> /usr/local/freesurfer/mne/MNE-2.7.0-3106-Linux-x86_64/bin/mne_make_source_space:
>  ELF[1][1]: not found
>
>
>
> Apparently is searching for a file with wrong encoding.
>
>
>
> Is there something else I should do to make it run?
>
> I have installed already netpbm successfully but I had the same problem when
> running mne_setup_source_space.
>
> I also have  set the encoding to utf-8 but no change in my error.
>
>
>
> Another  thing is that  I am able to run mne_watershed_bem and create the
> .surf files the .COR files but at the end an error appears and I don’t have
> the .fif files in my bem/watershed folder or bem/watershed/ws folder.
>
> Also an error related to encoding appears so I guess the 2 errors are
> related.
>
>
>
> Can you please help in solving this issue?
>
> Thank you.
>
> Best Regards,
>
>
>
> K. (Nadia) Kalogianni
>
> PhD candidate
>
>
>
> TU Delft / Department of Biomechanical Engineering
> Mekelweg 2
> 2628 CD Delft
> Room: 34-H-3-320
> T +31 15-27 84230
> E  k.kalogianni at tudelft.nl
>
>
>
>
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