[Mne_analysis] Spatiotemporal cluster test in a subset of vertices

Eric Larson larson.eric.d at gmail.com
Mon Aug 11 19:16:33 EDT 2014
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For now, you can use the `spatial_exclude` parameter of the clustering
functions to exclude all the source space vertices outside your label:

http://martinos.org/mne/stable/generated/mne.stats.spatio_temporal_cluster_1samp_test.html#mne.stats.spatio_temporal_cluster_1samp_test

Denis also has some work going to make it easier:

https://github.com/mne-tools/mne-python/pull/1503

Eric



On Mon, Aug 11, 2014 at 4:05 PM, Tal Linzen <tal.linzen at gmail.com> wrote:

> Hi all,
>
> How do I restrict the spatiotemporal cluster test to a label? I've been
> trying to work off of this example:
>
>
> http://martinos.org/mne/stable/auto_examples/stats/plot_cluster_stats_spatio_temporal.html
>
> And zeroed in on the following line as the line I'd probably want to
> modify:
>
> connectivity = spatial_tris_connectivity(grade_to_tris(5))
>
> But this is pretty opaque to me and I'm not sure what the next step would
> be.
>
> Thanks,
> Tal
>
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