[Mne_analysis] Spatiotemporal cluster test in a subset of vertices

[Denis-Alexander Engemann]

Hi Tal,

also have a look at this example (in combination wtih #1503):

https://gist.github.com/dengemann/ea482183be869568412c

Denis


On Tue, Aug 12, 2014 at 1:16 AM, Eric Larson <larson.eric.d at gmail.com>
wrote:

> For now, you can use the `spatial_exclude` parameter of the clustering
> functions to exclude all the source space vertices outside your label:
>
>
> http://martinos.org/mne/stable/generated/mne.stats.spatio_temporal_cluster_1samp_test.html#mne.stats.spatio_temporal_cluster_1samp_test
>
> Denis also has some work going to make it easier:
>
> https://github.com/mne-tools/mne-python/pull/1503
>
> Eric
>
>
>
>  On Mon, Aug 11, 2014 at 4:05 PM, Tal Linzen <tal.linzen at gmail.com> wrote:
>
>>  Hi all,
>>
>> How do I restrict the spatiotemporal cluster test to a label? I've been
>> trying to work off of this example:
>>
>>
>> http://martinos.org/mne/stable/auto_examples/stats/plot_cluster_stats_spatio_temporal.html
>>
>> And zeroed in on the following line as the line I'd probably want to
>> modify:
>>
>> connectivity = spatial_tris_connectivity(grade_to_tris(5))
>>
>> But this is pretty opaque to me and I'm not sure what the next step would
>> be.
>>
>> Thanks,
>> Tal
>>
>> _______________________________________________
>> Mne_analysis mailing list
>> Mne_analysis at nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you
>> in error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20140812/cbd474c5/attachment.html