[Mne_analysis] mne_do_forward_solution Desired tag (unknown [3600]) not found Forward computation failed (see above)

Matti Hamalainen msh at nmr.mgh.harvard.edu
Sun Feb 23 14:35:20 EST 2014
Search archives:


Hi Dave,

I removed the loophole in MNE-C which caused the uninformative error message to appear. This fix will be present tomorrow in the "nightly build" on our website. If you the coordinate transformation file is empty, you will  get the correct error message.

- Matti
 
On Feb 22, 2014, at 7:46 PM, David Leitman <leitman at mail.med.upenn.edu> wrote:

> Hi Matti,
> 
> For some reason file COR-neuromag_101013.fif was created but it has zero bytes in it! must have not been saved or was corrupted. Will have to create a new COR file and try again :)
> 
> thanks for the help.
> 
> dave
> 
> 
> 
> 
> ----- Original Message -----
> From: "Matti Hamalainen" <msh at nmr.mgh.harvard.edu>
> To: "Alexandre Gramfort" <alexandre.gramfort at telecom-paristech.fr>
> Cc: "David I Leitman" <leitman at mail.med.upenn.edu>, "mne analysis" <mne_analysis at nmr.mgh.harvard.edu>
> Sent: Saturday, February 22, 2014 8:28:41 AM
> Subject: Re: [Mne_analysis] mne_do_forward_solution Desired tag (unknown [3600]) not found Forward computation failed (see above)
> 
> 
> Hi David,
> 
> The error message you get is fake. This does not directly relate to what happened. 
> 
> Is 
> 
> Read 2 source spaces a total of 20484 active source locations
> 
> indeed, the last log line before the error message? Can you send 
> 
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/mri/T1-neuromag/sets/COR-neuromag_101013.fif
> 
> to me. Next after the source space setup mne_forward_solution should read the MRI/MEG transform from this file but I cannot see how this could fail without producing the correct error message.
> 
> - Matti
> 
> 
> 
> On Feb 22, 2014, at 8:19 AM, Alexandre Gramfort <alexandre.gramfort at telecom-paristech.fr> wrote:
> 
>> hi David,
>> 
>> are you sure it's the same command line you type all the time?
>> 
>> is there a chance the measurement info changed between acquisitions?
>> 
>> btw I recommend you name your evoked data finishing with -ave.fif
>> Consistency in fif files naming really helps.
>> 
>> Alex
>> 
>> 
>> On Fri, Feb 21, 2014 at 10:47 PM, David I Leitman
>> <leitman at mail.med.upenn.edu> wrote:
>>> Hi all,
>>> 
>>> I was curious why I might be getting this error.... for most of my files
>>> this command works problem free?
>>> 
>>> -thanks Dave
>>> 
>>> Running Command Number mne_do_forward_solution    --subject $SUBJECT
>>> --src $SUBJECT-ico-5-src.fif    --bem $SUBJECT-5120-5120-5120-bem-sol.fif
>>> --meas $file    --eegonly    --fwd
>>> ${SUBJECT}_AR_noBC-epoched-${SUBJECT}-5-eeg-src-fwd.fif    --overwrite
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/meg/L16962_AR_noBC-epoched.fif
>>> 
>>> mne_forward_solution version 2.10 compiled at Sep  4 2013 04:24:23
>>> 
>>> Source space                 :
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/bem/L16962-ico-5-src.fif
>>> MRI -> head transform source :
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/mri/T1-neuromag/sets/COR-neuromag_101013.fif
>>> Measurement data             :
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/meg/L16962_AR_noBC-epoched.fif
>>> BEM model                    :
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/bem/L16962-5120-5120-5120-bem.fif
>>> Accurate field computations
>>> Do computations in head coordinates.
>>> Free source orientations
>>> Destination for the solution :
>>> L16962_AR_noBC-epoched-L16962-5-eeg-src-fwd.fif
>>> 
>>> Reading
>>> /mnt/thothdisk1/K_AWARD/K_DATA/MEG_DATA/L16962/bem/L16962-ico-5-src.fif...
>>> Read 2 source spaces a total of 20484 active source locations
>>> 
>>> Desired tag (unknown [3600]) not found
>>> Forward computation failed (see above)
>>> David I. Leitman PhD
>>> 
>>> Research Assistant Professor
>>> Department of Psychiatry-
>>> Neuropsychiatry program
>>> Perelman School of Medicine
>>> University of Pennsylvania
>>> Gates Pavilion 10th floor room 1042
>>> 3400 Spruce St
>>> Philadelphia, PA 19104-4283
>>> P: (215) 662-7389
>>> F: (215) 662-7903
>>> E: leitman at mail.med.upenn.edu
>>> Faculty page: http://www.med.upenn.edu/apps/faculty/index.php/g275/p8174343
>>> Lab website:
>>> http://davidileitman.com
>>> 
>>> The information contained in this e-mail message is intended only for the
>>> personal and confidential use of the recipient(s) named above.  If the
>>> reader of this message is not the intended recipient or an agent responsible
>>> for delivering it to the intended recipient, you are hereby notified that
>>> you have received this document in error and that any review, dissemination,
>>> distribution, or copying of this message is strictly prohibited.  If you
>>> have received this communication in error, please notify the the
>>> Neuropsychiatry Section immediately by e-mail, and delete the original
>>> message.
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Mne_analysis mailing list
>>> Mne_analysis at nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>>> 
>>> 
>>> The information in this e-mail is intended only for the person to whom it is
>>> addressed. If you believe this e-mail was sent to you in error and the
>>> e-mail
>>> contains patient information, please contact the Partners Compliance
>>> HelpLine at
>>> http://www.partners.org/complianceline . If the e-mail was sent to you in
>>> error
>>> but does not contain patient information, please contact the sender and
>>> properly
>>> dispose of the e-mail.
>>> 
>> _______________________________________________
>> Mne_analysis mailing list
>> Mne_analysis at nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>> 
>> 
> 
> 
> 
> ---------
> 
> Matti Hamalainen, Ph.D.
> Athinoula A. Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
> 
> msh at nmr.mgh.harvard.edu
> mhamalainen at partners.org
> 
> 
> 
> 
> 
> 
> 
> 





More information about the Mne_analysis mailing list