[Mne_analysis] Issue with mne_setup_source_space
kousik sarathy
sarathykousik at gmail.com
Mon Mar 3 07:04:29 EST 2014
Hello,
I am trying to create a mesh using MNE (following this tutorial:
http://fieldtrip.fcdonders.nl/tutorial/minimumnormestimate). I am using the
Xubuntu virutal box from FreeSurfer. I already carried out the steps in
FreeSurfer successfully.
I then followed the manual to setup MNE and here's what I did. Even then I
get an error saying it cannot find a make_source file.
Is there any solution someone could point out?
Here's the copy of my shell outputs.
root at xubuntu-VirtualBox:~# export
MNE_ROOT=/media/sf_J_DRIVE/MNE-2.7.4-3436-Linux-i686
root at xubuntu-VirtualBox:~# $MNE_ROOT/bin/mne_setup_sh
MNE software location set to: /media/sf_J_DRIVE/MNE-2.7.4-3436-Linux-i686
MATLAB software not available
root at xubuntu-VirtualBox:~# $MNE_ROOT/bin/mne_setup
MNE software location set to: /media/sf_J_DRIVE/MNE-2.7.4-3436-Linux-i686
MATLAB software not available
root at xubuntu-VirtualBox:~# echo $SHELL
/bin/bash
root at xubuntu-VirtualBox:~# export SUBJECT=014_NJO
root at xubuntu-VirtualBox:~# echo $SUBJECTS_DIR
/usr/local/freesurfer/subjects
root at xubuntu-VirtualBox:~# cd $MNE_ROOT/bin
root at xubuntu-VirtualBox:/media/sf_J_DRIVE/MNE-2.7.4-3436-Linux-i686/bin#
./mne_setup_source_space --ico -6
Setting up the source space with the following parameters:
SUBJECTS_DIR = /usr/local/freesurfer/subjects
Subject = 014_NJO
Surface = white
Octahedron subdivision grade 6
>>> 1. Creating the source space file
/usr/local/freesurfer/subjects/014_NJO/bem/014_NJO-oct-6-src.fif...
./mne_setup_source_space: 311: ./mne_setup_source_space:
mne_make_source_space: not found
Source space creation failed
Temporary files removed.
Thanks,
--
Regards,
Kousik Sarathy, S
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