[Mne_analysis] No BEM surfaces found
Alan
leggitta3 at gmail.com
Fri May 16 18:55:54 EDT 2014
Hello,
I’m trying to run mne_do_forward_model on the SPM dataset. I get the
following error
aleggitt at cerebrum:~$ mne_do_forward_solution --meas
/data/users/alanData/SPM-face/MEG/SPM_CTF_MEG_example_faces1_3D.fif
--mri /data/users/alanData/SPM-face/subjects/SPM/mri/T1-neuromag/sets/COR.fif
--bem /data/users/alanData/SPM-face/subjects/SPM/bem/SPM-20480-20480-20480-bem.fif
mne_forward_solution version 2.9 compiled at Jan 6 2011 02:25:30
Source space :
/data/users/alanData/SPM-face/subjects/SPM/bem/SPM-7-src.fif
MRI -> head transform source :
/data/users/alanData/SPM-face/subjects/SPM/mri/T1-neuromag/sets/COR.fif
Measurement data :
/data/users/alanData/SPM-face/MEG/SPM_CTF_MEG_example_faces1_3D.fif
BEM model :
/data/users/alanData/SPM-face/subjects/SPM/bem/SPM-20480-20480-20480-bem.fif
Accurate field computations
Do computations in head coordinates.
Free source orientations
Destination for the solution :
/data/users/alanData/SPM-face/MEG/SPM_CTF_MEG_example_faces1_3D-7-fwd.fif
Reading /data/users/alanData/SPM-face/subjects/SPM/bem/SPM-7-src.fif...
Read 2 source spaces a total of 6382 active source locations
Coordinate transformation: MRI (surface RAS) -> head
1.000000 0.000000 0.000000 -0.00 mm
0.000000 1.000000 0.000000 -0.00 mm
0.000000 0.000000 1.000000 -0.00 mm
0.000000 0.000000 0.000000 1.00
Read 274 MEG channels from
/data/users/alanData/SPM-face/MEG/SPM_CTF_MEG_example_faces1_3D.fif
Read 29 MEG compensation channels from
/data/users/alanData/SPM-face/MEG/SPM_CTF_MEG_example_faces1_3D.fif
Coordinate transformation: MEG device -> head
0.997940 -0.049681 -0.040594 -1.35 mm
0.054745 0.989330 0.135013 -0.41 mm
0.033453 -0.136957 0.990012 65.80 mm
0.000000 0.000000 0.000000 1.0057 coil definitions read5
compensation data sets in
/data/users/alanData/SPM-face/MEG/SPM_CTF_MEG_example_faces1_3D.fif
Head coordinate coil definitions created.
Source spaces are now in head coordinates.
Setting up the BEM model using
/data/users/alanData/SPM-face/subjects/SPM/bem/SPM-20480-20480-20480-bem-sol.fif...
Loading surfaces...
No BEM surfaces found in
/data/users/alanData/SPM-face/subjects/SPM/bem/SPM-20480-20480-20480-bem-sol.fif
Forward computation failed (see above)
Prior to running this, I’ve successfully run the following commands
mne_setup_mri
mne_watershed_bem
mne_setup_foward_model --surf
mne_setup_source_space
Am I missing a step or do I need to modify my options for
mne_do_forward_model?
Thanks,
Alan
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