[Mne_analysis] What do people use for fMRI/MRI processing?

[Alexandre Gramfort]

hi Chris,

you should ask this question on the neuroimaging at python.org mailing
(former nipy list).

anatomical registration is so far out of the scope of MNE but maybe
someone here can help using freesurfer/fsl tools I personally don't
master.

Alex


On Fri, Nov 20, 2015 at 6:10 PM, Chris Holdgraf <choldgraf at berkeley.edu> wrote:
> Hey all - I'm starting to get a bit into the world of MRI preprocessing for
> an ECoG project. We have a number of tools in the lab that do this in
> Matlab, but I'm wondering if such tools exist in python as well.
>
> For example, a post-doc in our lab is one of the developers of Fieldtrip,
> and he's been using their calls to SPM (or FSL) to do CT-MRI coregistrations
> in Matlab. Does something like this exist in python, or do most people go to
> an external package / use Matlab?
>
> Chris
>
> --
> _____________________________________
>
> PhD Candidate in Neuroscience | UC Berkeley
> Editor and Web Director | Berkeley Science Review
> _____________________________________
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>