[Mne_analysis] reject parameter for epochs and get_data()

[Jaakko Leppäkangas]

Could it be that you have triggers at the end of the data (or you have a
big tmax) so that the ends of the epochs go beyond the recorded data?

On 5 April 2016 at 10:55, Laetitia Grabot <laetitia.grabot at gmail.com> wrote:

> Ahh, I get a list of [IGNORED], 19 [TOO_SHORT] and []! So do you have an
> idea of why some epochs are too short ?
>
> 2016-04-05 10:38 GMT+02:00 Jaakko Leppäkangas <jaeilepp at student.jyu.fi>:
>
>> Hi Laetitia,
>>
>> what is the output if you type epochs_s.drop_log? That might give some
>> clues of why they're dropped.
>>
>> -Jaakko
>>
>> On 5 April 2016 at 10:34, Laetitia Grabot <laetitia.grabot at gmail.com>
>> wrote:
>>
>>> For instance, I have the following output: 118 epochs corresponding to
>>> events=200 are found, but when I applied get_data, 19 epochs are dropped...
>>>
>>> epochs_s= mne.Epochs(raw,new_events, event_id,tmin,tmax, picks=picks,
>>> baseline=(tmin_bsl,0))
>>>
>>>     ...:
>>>
>>> 118 matching events found
>>>
>>> Created an SSP operator (subspace dimension = 1)
>>>
>>> 1 projection items activated
>>>
>>>
>>> epochs_s.get_data().shape
>>>
>>> Applying baseline correction ... (mode: mean)
>>>
>>> 19 bad epochs dropped
>>>
>>> Out[59]: (99, 366, 1701)
>>>
>>> 2016-04-05 10:29 GMT+02:00 Laetitia Grabot <laetitia.grabot at gmail.com>:
>>>
>>>> I have:
>>>> event_id = 200 and I got only epochs corresponding to this events when
>>>> I created the epochs object. However I still have some bad epochs dropped
>>>> (their event_id are also 200) when I am usins epochs.get_data()...
>>>>
>>>> 2016-04-05 10:25 GMT+02:00 Alexandre Gramfort <
>>>> alexandre.gramfort at telecom-paristech.fr>:
>>>>
>>>>> what is the content of event_id and events?
>>>>>
>>>>> Epochs only keeps the events that belong to event_id
>>>>>
>>>>> Alex
>>>>>
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