[Mne_analysis] interactive gui

[Moorselaar, D. van]

Hey Teon,

Thanks for your quick reply. The plotting of mne_browse_raw works fine. However, I should have been more clear in my question. I am looking for a way to quickly browse through my epoched data to check whether there are any remaining artifacts after automatic artifact rejection. In Matlab I was able to scroll to plots of EEG data to visually inspect the data and select epochs for rejection. Is this also possible in python via mne? I can now only think of the very inefficient work around to loop over all epochs with mne_browse_raw

Thank you,

Dirk


On Apr 13, 2016, at 12:34 AM, Teon Brooks <teon.brooks at gmail.com<mailto:teon.brooks at gmail.com>> wrote:

Hi Dirk,

To get started with mne using the python tools, you can follow along with this example<http://martinos.org/mne/stable/auto_examples/io/plot_read_and_write_raw_data.html#sphx-glr-auto-examples-io-plot-read-and-write-raw-data-py> and our intro<http://martinos.org/mne/stable/auto_tutorials/plot_introduction.html>. We have a python implementation of mne_browse_raw with core overlapping features. To browse your data, you need to read it in using the appropriate function here<http://martinos.org/mne/stable/manual/io.html> given your data type (raw = mne.io.read_raw_xxx). Then you can plot and inspect your data using raw.plot().

Feel free to browse our website<http://martinos.org/mne/>. Let us know if you have any questions or if you find a particular section confusing.

HTH,



teon
--


Teon Brooks, PhD Candidate
NSF Fellow, Chateaubriand Fellow
Department of Psychology, New York University
Researcher | OpenBCI
Co-Chair | BraiNY, Greater NYC Chapter of Society for Neuroscience

On Tue, Apr 12, 2016 at 7:48 PM, Moorselaar, D. van <d.van.moorselaar at vu.nl<mailto:d.van.moorselaar at vu.nl>> wrote:
Hello,

Sorry to bother you with this probably very stupid question. I have been working with mne software for about a year now. Until now I have always done data inspection via EEGLab in matlab and run all analysis via mne based python scripts. However, I would like to switch my entire pipeline to mne/python, but I seem to be unable to launch the user interface of me_browse_raw. Could anyone please tell me what I need to do to launch this interface.

Thank you very much,

Dirk




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