[Mne_analysis] mne.viz.plot_source_estimates generates a blank window

Gladia Hotan gladiach at gmail.com
Tue Apr 26 13:30:19 EDT 2016
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Hi, I ran mne.viz.plot_source_estimates(stc,subject=<subject_name>,...) but
I got a blank window and this error:

(<unknown>:39799): Gtk-WARNING **: gtk_disable_setlocale() must be called
before gtk_init()
Traceback (most recent call last):
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/IPython/core/interactiveshell.py",
line 3035, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "<ipython-input-1-16aa827441a7>", line 1, in <module>

mne.viz.plot_source_estimates(stc,subject='eeganes03',surface='inflated',hemi='lh',colormap='auto',time_label='time=%0.2fms',smoothing_steps=10,transparent=None,alpha=1.0,time_viewer=False,config_opts=None,subjects_dir=None,figure=None,views='lat',colorbar=True,clim='auto')
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/mne/viz/_3d.py",
line 593, in plot_source_estimates
    brain = Brain(subject, hemi, surface, **kwargs)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/surfer/viz.py",
line 395, in __init__
    self._scene_size, offscreen)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/surfer/viz.py",
line 212, in _make_viewer
    figure = mlab.figure(title, size=(w, h))
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/mayavi/tools/figure.py",
line 86, in figure
    engine.new_scene(name=name, size=size)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/apptools/scripting/recordable.py",
line 45, in _wrapper
    result = func(*args, **kw)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/mayavi/core/engine.py",
line 434, in new_scene
    viewer = self.scene_factory(**factory_kwargs)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/mayavi/core/ui/mayavi_scene.py",
line 89, in viewer_factory
    viewer.open()
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/pyface/i_window.py",
line 145, in open
    self._create()
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/pyface/ui/wx/application_window.py",
line 151, in _create
    contents = self._create_contents(body)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/tools/ivtk.py",
line 392, in _create_contents
    self.scene = self._scene_factory(parent)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/mayavi/core/ui/mayavi_scene.py",
line 68, in mayavi_scene_factory
    s = MayaviScene(parent, stereo=p['stereo'])
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/pyface/ui/wx/decorated_scene.py",
line 69, in __init__
    super(DecoratedScene, self).__init__(parent, **traits)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/pyface/ui/wx/scene.py",
line 302, in __init__
    super(Scene, self).__init__(parent, **traits)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/pyface/tvtk_scene.py",
line 201, in __init__
    self.control = self._create_control(parent)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/pyface/ui/wx/decorated_scene.py",
line 103, in _create_control
    self._panel)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/pyface/ui/wx/scene.py",
line 575, in _create_control
    stereo=self.stereo)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/tvtk/pyface/ui/wx/wxVTKRenderWindowInteractor.py",
line 186, in __init__
    attribList=attribList)
  File
"/usr/pubsw/packages/python/anaconda/lib/python2.7/site-packages/wx-3.0-gtk2/wx/glcanvas.py",
line 106, in __init__
    _glcanvas.GLCanvas_swiginit(self,_glcanvas.new_GLCanvas(*args,
**kwargs))
TypeError: Argument given by name ('attribList') and position (3)

I get the same error whether or not I set the 'SUBJECT' environment
variable (using os.environ['SUBJECT']=<subject_name>. Could anyone tell me
how to get around this?

Best,
Gladia
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