[Mne_analysis] Mne_analysis Digest, Vol 97, Issue 4

Peng Zan zanpeng.pz at gmail.com
Sat Feb 13 12:09:02 EST 2016
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Thanks, Alex!

I saw it but it has a major cited function of mri_watershed, which is the
key to mne_watershed. My point is where I can find the source code of
mri_watershed?

Thank you very much!

Best,
Peng

On Sat, Feb 13, 2016 at 12:00 PM, <mne_analysis-request at nmr.mgh.harvard.edu>
wrote:

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>    1. Re: mne_watershed_bem problems (Alexandre Gramfort)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 12 Feb 2016 21:45:21 +0100
> From: Alexandre Gramfort <alexandre.gramfort at telecom-paristech.fr>
> Subject: Re: [Mne_analysis] mne_watershed_bem problems
> To: Discussion and support forum for the users of MNE Software
>         <mne_analysis at nmr.mgh.harvard.edu>
> Message-ID:
>         <
> CADeotZrVB6BCJuxfD2NT5VAXUgSzSw1+Gg8na9L+pzJMOB_Y_g at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> hi,
>
> see :
>
>
> https://github.com/mne-tools/mne-python/blob/master/mne/commands/mne_watershed_bem.py
>
> it's the code we use that is based on freesurfer commands.
>
> HTH
> Alex
>
>
> On Fri, Feb 12, 2016 at 12:41 AM, Peng Zan <zanpeng.pz at gmail.com> wrote:
> > Dear MNE experts,
> >
> > I am currently doing mne analysis and came into the problem with
> > mne_watershed_bem. From this command, three files of inner and outer
> skull
> > and outer skin surface were generated, but the outer skull reached
> outside
> > of the outer skin surface so I was not able to go on to construct the the
> > bem model and then the forward solution. Do you know what is the reason
> > causing this error? And how do I fix this? Besides, I could not find the
> > source code for mri_watershed command, which has its binary codes in the
> MNE
> > package. Where can I find the source file, and how could I edit the
> > algorithm to make any changes to MNE toolbox?
> >
> > Thank you very much!
> >
> > Best,
> > Peng
> >
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