[Mne_analysis] Mne_analysis Digest, Vol 97, Issue 4

[Peng Zan]

Sorry, I meant in the 'bin/' directory of mne package, mne_watershed_bem
called the function of mri_wathershed, while in mne_watershed.py, function
'mne.bem' is called. Where can I find those two files if I want to check
the algorithm in detail.

Thank you very much!

Best,
Peng

On Sat, Feb 13, 2016 at 12:09 PM, Peng Zan <zanpeng.pz at gmail.com> wrote:

> Thanks, Alex!
>
> I saw it but it has a major cited function of mri_watershed, which is the
> key to mne_watershed. My point is where I can find the source code of
> mri_watershed?
>
> Thank you very much!
>
> Best,
> Peng
>
> On Sat, Feb 13, 2016 at 12:00 PM, <
> mne_analysis-request at nmr.mgh.harvard.edu> wrote:
>
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>>    1. Re: mne_watershed_bem problems (Alexandre Gramfort)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 12 Feb 2016 21:45:21 +0100
>> From: Alexandre Gramfort <alexandre.gramfort at telecom-paristech.fr>
>> Subject: Re: [Mne_analysis] mne_watershed_bem problems
>> To: Discussion and support forum for the users of MNE Software
>>         <mne_analysis at nmr.mgh.harvard.edu>
>> Message-ID:
>>         <
>> CADeotZrVB6BCJuxfD2NT5VAXUgSzSw1+Gg8na9L+pzJMOB_Y_g at mail.gmail.com>
>> Content-Type: text/plain; charset=UTF-8
>>
>> hi,
>>
>> see :
>>
>>
>> https://github.com/mne-tools/mne-python/blob/master/mne/commands/mne_watershed_bem.py
>>
>> it's the code we use that is based on freesurfer commands.
>>
>> HTH
>> Alex
>>
>>
>> On Fri, Feb 12, 2016 at 12:41 AM, Peng Zan <zanpeng.pz at gmail.com> wrote:
>> > Dear MNE experts,
>> >
>> > I am currently doing mne analysis and came into the problem with
>> > mne_watershed_bem. From this command, three files of inner and outer
>> skull
>> > and outer skin surface were generated, but the outer skull reached
>> outside
>> > of the outer skin surface so I was not able to go on to construct the
>> the
>> > bem model and then the forward solution. Do you know what is the reason
>> > causing this error? And how do I fix this? Besides, I could not find the
>> > source code for mri_watershed command, which has its binary codes in
>> the MNE
>> > package. Where can I find the source file, and how could I edit the
>> > algorithm to make any changes to MNE toolbox?
>> >
>> > Thank you very much!
>> >
>> > Best,
>> > Peng
>> >
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