[Mne_analysis] mne_analyze Xmsh_error_popup: "Please load the main surfaces first"

[Nakagawa Tristan T]

Hi Alex,


my apologies, I had overlooked to run

. $MNE_ROOT/bin/mne_setup_sh

before starting mne_analyze. The dialogue opened but the windows where
missing. however, the mri viewer worked So I didn't think too much of it.
Same for the sample data. I just found this post here though, which
fixed it as mentioned above.

https://mail.nmr.mgh.harvard.edu/pipermail//mne_analysis/2013-November/001717.html

Thanks for the help,
best,
Tristan



On 2016年03月01日 18:36, Alexandre Gramfort wrote:
> hi Tristan,
>
> do you have the same problem when trying using the MNE sample data?
>
> https://mne-tools.s3.amazonaws.com/datasets/MNE-sample-data-processed.tar.gz
>
> if this works make sure your respect the layout of the anatomical
> files on disk for your subjects.
>
> Let us know how it goes.
>
> Alex
>
>
> On Tue, Mar 1, 2016 at 8:48 AM, Nakagawa Tristan T
> <nakagawa-t at ifrec.osaka-u.ac.jp> wrote:
>> Hi,
>>
>> I am trying to coregister my MEG and T1 images, but I am stuck at
>> aligning the coordinate frameworks:
>> http://martinos.org/mne/stable/manual/cookbook.html#aligning-coordinate-frames
>>
>> I successfully created the surface models with mne_setup_source_space
>> and mne_watershed_bme and linked them,
>> created a forward model with mne_setup_forward_model,
>>
>> And when opening mne_analyze, I get a list of Surfaces to be loaded for
>> the subject (inflated being pre-marked).
>> When loading any surface by pressing ok, The loading dialog closes with
>> no error.
>>
>> However, the Viewer gives the above mentioned error and doesn't open.
>> ShowMRIViewer works, but when trying to open the viewer I get the error
>> above.
>>
>> I can load digitizer points. I use mne_analyze version 2.56 on ubuntu
>> linux x64.
>>
>> Thanks for any help,
>>
>> Tristan
>>
>> --
>> Tristan T. Nakagawa, Ph.D.
>> Laboratory for Brain-Immune Interaction,
>> iFReC, Osaka University
>> 3-1 Yamadaoka, Suita, Osaka, Japan
>> Tel: 0668789710
>> Office: CiNet R 2B6-2
>> http://seymourlab.com
>>
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-- 
Tristan T. Nakagawa, Ph.D.
Laboratory for Brain-Immune Interaction,
iFReC, Osaka University 
3-1 Yamadaoka, Suita, Osaka, Japan
Tel: 0668789710
Office: CiNet R 2B6-2
http://seymourlab.com