[Mne_analysis] mne_analyze Xmsh_error_popup: "Please load the main surfaces first"

[dgw]

Hi Björn,

Does the inflated surface show up in the mne_analyze window? Is there
any information in the terminal?

Thanks
d


On Wed, Mar 2, 2016 at 1:27 PM, Björn Herrmann <herrmann.b at gmail.com> wrote:
> Hello members,
>
> I found a problem in the list's archives which I have as well (I
> copied it below). Tristan described it in detail (see below), so I
> won't repeat it here (problem to open the viewer in mne_analyze). I
> followed Alex's suggestion using the sample data set, but the problem
> remains. I use the newest MNE version (Tristan seemed to have used an
> older one) on a new Ubuntu Linux 64bit. Maybe one of you has a
> solution? Currently, I cannot co-register the MRI and MEG.
> Thank you for any help.
>
>
> Björn
>
> -----------------
>
> hi Tristan,
>
> do you have the same problem when trying using the MNE sample data?
>
> https://mne-tools.s3.amazonaws.com/datasets/MNE-sample-data-processed.tar.gz
>
> if this works make sure your respect the layout of the anatomical
> files on disk for your subjects.
>
> Let us know how it goes.
>
> Alex
>
>
> On Tue, Mar 1, 2016 at 8:48 AM, Nakagawa Tristan T
> <nakagawa-t at ifrec.osaka-u.ac.jp> wrote:
>> Hi,
>>
>> I am trying to coregister my MEG and T1 images, but I am stuck at
>> aligning the coordinate frameworks:
>> http://martinos.org/mne/stable/manual/cookbook.html#aligning-coordinate-frames
>>
>> I successfully created the surface models with mne_setup_source_space
>> and mne_watershed_bme and linked them,
>> created a forward model with mne_setup_forward_model,
>>
>> And when opening mne_analyze, I get a list of Surfaces to be loaded for
>> the subject (inflated being pre-marked).
>> When loading any surface by pressing ok, The loading dialog closes with
>> no error.
>>
>> However, the Viewer gives the above mentioned error and doesn't open.
>> ShowMRIViewer works, but when trying to open the viewer I get the error
>> above.
>>
>> I can load digitizer points. I use mne_analyze version 2.56 on ubuntu
>> linux x64.
>>
>> Thanks for any help,
>>
>> Tristan
>>
>> --
>> Tristan T. Nakagawa, Ph.D.
>> Laboratory for Brain-Immune Interaction,
>> iFReC, Osaka University
>> 3-1 Yamadaoka, Suita, Osaka, Japan
>> Tel: 0668789710
>> Office: CiNet R 2B6-2
>> http://seymourlab.com
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in error
> but does not contain patient information, please contact the sender and properly
> dispose of the e-mail.