[Mne_analysis] Having trouble with stc.morph

[Keith Doelling]

I am morphing my source data based on a participant MRI into the fsaverage.
However using stc.morph seems to be giving me some trouble. After the
morph, plotting the data shows me completely different activations which
are entirely in the occipital lobe, the rest of the brain seems to have
been zero'ed out. I'm attaching examples below. Here's the command I
entered for the morph:

stc_avgaud =
stc_aud.morph(subject_to='fsaverage',subjects_dir=freesurfer_dir)

Any ideas on how to fix this would be very useful.

Thank you!

Links to examples

https://drive.google.com/file/d/0B8MuP64ahFOpWjJYY2lVOGIyOWZOMFktN18yWWZycXE3Q0Fj/view?usp=docslist_api

https://drive.google.com/file/d/0B8MuP64ahFOpelRzd0xIRmVVai1oelhVWUhVTTVveHhlUFQ0/view?usp=docslist_api

Sent from my phone... excuse the short message
On Mar 22, 2016 1:41 PM, "Keith Doelling" <kd889 at nyu.edu> wrote:

> I am morphing my source data based on a participant MRI into the
> fsaverage. However using stc.morph seems to be giving me some trouble.
> After the morph, plotting the data shows me completely different
> activations which are entirely in the occipital lobe, the rest of the brain
> seems to have been zero'ed out. I'm attaching examples below. Here's the
> command I entered for the morph:
>
> stc_avgaud =
> stc_aud.morph(subject_to='fsaverage',subjects_dir=freesurfer_dir)
>
> Any ideas on how to fix this would be very useful.
>
> Thank you!
>
> ----------------------------------
> Keith Doelling
> Dept of Psychology
> Center for Neural Science
> NYU
>
> science.keithdoelling.com
>
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