[Mne_analysis] Having trouble with stc.morph

[dgw]

Hi Keith,

You need to load the morphed data onto fsaverage. You are still
viewing it on that individual's brain.

hth
d

On Tue, Mar 22, 2016 at 2:01 PM, Keith Doelling <kd889 at nyu.edu> wrote:
> I am morphing my source data based on a participant MRI into the fsaverage.
> However using stc.morph seems to be giving me some trouble. After the morph,
> plotting the data shows me completely different activations which are
> entirely in the occipital lobe, the rest of the brain seems to have been
> zero'ed out. I'm attaching examples below. Here's the command I entered for
> the morph:
>
> stc_avgaud =
> stc_aud.morph(subject_to='fsaverage',subjects_dir=freesurfer_dir)
>
> Any ideas on how to fix this would be very useful.
>
> Thank you!
>
> Links to examples
>
> https://drive.google.com/file/d/0B8MuP64ahFOpWjJYY2lVOGIyOWZOMFktN18yWWZycXE3Q0Fj/view?usp=docslist_api
>
> https://drive.google.com/file/d/0B8MuP64ahFOpelRzd0xIRmVVai1oelhVWUhVTTVveHhlUFQ0/view?usp=docslist_api
>
> Sent from my phone... excuse the short message
>
> On Mar 22, 2016 1:41 PM, "Keith Doelling" <kd889 at nyu.edu> wrote:
>>
>> I am morphing my source data based on a participant MRI into the
>> fsaverage. However using stc.morph seems to be giving me some trouble. After
>> the morph, plotting the data shows me completely different activations which
>> are entirely in the occipital lobe, the rest of the brain seems to have been
>> zero'ed out. I'm attaching examples below. Here's the command I entered for
>> the morph:
>>
>> stc_avgaud =
>> stc_aud.morph(subject_to='fsaverage',subjects_dir=freesurfer_dir)
>>
>> Any ideas on how to fix this would be very useful.
>>
>> Thank you!
>>
>> ----------------------------------
>> Keith Doelling
>> Dept of Psychology
>> Center for Neural Science
>> NYU
>>
>> science.keithdoelling.com
>
>
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