[Mne_analysis] running recon-all with -notalairach flag

Ritesh Mahajan ritesh.mahajan at ripl.ricoh.com
Tue Aug 22 04:33:31 EDT 2017
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Thanks Alex.

----- Original Message -----
From: "Alexandre Gramfort" <alexandre.gramfort at inria.fr>
To: "mne analysis" <mne_analysis at nmr.mgh.harvard.edu>
Sent: Tuesday, August 22, 2017 1:24:34 PM
Subject: Re: [Mne_analysis] running recon-all with -notalairach flag

Dear Ritesh,

given the number of questions you have with freesurfer,
I would suggest you ask them on the freesurfer mailing list directly.

https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSupport

Best,
Alex

On Tue, Aug 22, 2017 at 6:41 AM, Ritesh Mahajan
<ritesh.mahajan at ripl.ricoh.com> wrote:
> Hello Team,
>
> I have run "recon-all -i subject.nii -s subject -all -notalairach" command, i wanted to run it with notalairach. I am getting the following error:
>
> "No such file or directory
> mris_anatomical_stats: could not open atlas transform file /subject/mri/transforms/talairach.xfm"
>
> How can i get the aseg.mgz image without transform?
>
> Thanks,
> Ritesh Mahajan
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