[Mne_analysis] Export mixed source space to nifti

[Lori Sanfratello]

Thank you for the replies.  I previously figured out a (cumbersome) way of
getting a surface from stc into nifti, but really need a way to get the
mixed source space in.  I will keep working on it. Best, Lori

On Thu, Dec 14, 2017 at 5:48 AM, Eric Larson <larson.eric.d at gmail.com>
wrote:

> In the meantime, the code necessary to put a surface source estimate into
> a NIfTI volume is in a work-in-progress pull request here:
>
> https://github.com/mne-tools/mne-python/pull/4496/files#diff-
> c38906291c7d4fa5e1df2d494b9c27d2R129
>
> Eric
>
>
> On Thu, Dec 14, 2017 at 7:40 AM, Alexandre Gramfort <
> alexandre.gramfort at inria.fr> wrote:
>
>> Dear Lori,
>>
>> presently in MNE there is no function to export a surface activation
>> to a volume.
>>
>> mri_surf2vol in freesurfer would be my approach but it would need
>> the high resolution activation as input.
>>
>> please open an issue at : https://github.com/mne-tools/mne-python/issues
>>
>> so you know when we implement this.
>>
>> Best,
>> Alex
>>
>> On Wed, Dec 13, 2017 at 11:02 PM, Lori Sanfratello <lsanfratello at mrn.org>
>> wrote:
>> > Hello, can't find a way to do this.  Found an old thread that talks
>> about
>> > "updated MixedSourceEstimate.export_volumes_to_nifti to include an
>> option to
>> > export the surface activations as well" at
>> > https://github.com/mne-tools/mne-python/pull/1462 . However, I can't
>> find
>> > documentation on using it, and it doesn't work if I try to use it
>> > (AttributeError: 'MixedSourceEstimate' object has no attribute
>> > 'export_volumes_to_nifti').  Any help would be appreciated. Thanks, Lori
>> >
>> > --
>> > Dr. L. Sanfratello, PhD
>> > Assistant Professor of Trans. Neuroscience
>> > The Mind Research Network,
>> > 1101 Yale Blvd NE
>> > Albuquerque, NM 87106
>> > 505 272-5557
>> >
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-- 
Dr. L. Sanfratello, PhD
Assistant Professor of Trans. Neuroscience
The Mind Research Network,
1101 Yale Blvd NE
Albuquerque, NM 87106
505 272-5557
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