[Mne_analysis] KIT layout for plots

[Yi-hui Hung]

Hi Kevin,

Thank you for the suggestions.
Somehow, mne.sys_info() did not get the version information but
mne.open_docs() did. I can confirm that I used MNE 0.15.
Besides, the function ica.plot_components(layout=kit_lay) do allow me to
plot plot the PCA components. However, the function
ica.plot_properties(epochs, i) did not work.

Veda



On Mon, Nov 27, 2017 at 10:27 PM, Kevin Chun-Hsien Hsu <u7305020 at gmail.com>
wrote:

> Hi Veda,
>
> Which version of mne do you use? I am using mne 0.15.dev0. I can import
> your CON file and plot ICA components estimated using your data. To check
> the version of mne:
>
> import mne
> mne.sys_info()
>
> If the output information describes earlier version of mne (<=0.14), try
> updating mne to the latest version might helps.
>
> Best,
> Kevin
>
>
>
>
>
> Message: 1
>> Date: Mon, 27 Nov 2017 11:36:59 +0800
>> From: Yi-hui Hung <vedahung1116 at gmail.com>
>> Subject: [Mne_analysis] KIT layout for plots
>> To: mne_analysis at nmr.mgh.harvard.edu
>> Message-ID:
>>         <CAA03Fj7RuZt4m8i53Pp+OBcn_zsadPLVuewW0shNz7nA+G93FA at mail.
>> gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi MNE experts,
>>
>> I used KIT system for MEG data recording.
>> MEG data were imported to mne with two following functions:
>> raw = mne.io.kit.read_raw_kit(file, stim = [200],preload=True)
>> kit_lay = mne.channels.layout.read_layout('KIT-TW-157.lout')
>>
>> However,I had problems with two following functions:
>>
>> (1) ica.plot_properties(epochs, i)
>>       error message: "the KIT system with ID 261 is missing"
>>
>> (2) mne.viz.plot_evoked_topo(evokeds, layout=kit_lay)
>>      no error message but caused the program to crash
>>
>> Your suggestions will be appreciated. Thanks!
>>
>> Best,
>> Veda
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>> Message: 2
>> Date: Sun, 26 Nov 2017 22:45:02 -0500
>> From: JR KING <jeanremi.king at gmail.com>
>> Subject: Re: [Mne_analysis] KIT layout for plots
>> To: Discussion and support forum for the users of MNE Software
>>         <mne_analysis at nmr.mgh.harvard.edu>
>> Message-ID:
>>         <CAOcgdcj-bSdB-efc8dULYCwD9TPYK-bAxkzvqWL8_1Vd-BZn7g at mail.
>> gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi
>>
>> For the first error, it is likely due to a KIT specificity issue. Can you
>> open an issue in github, and upload a small chunk of your data so that one
>> of us check it out (perhaps Teon, Eric or Christian? I'm on the road
>> sorry.)
>>
>> Thanks
>>
>>
>
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