[Mne_analysis] MNE processing (to get *stc file)

[Eric Larson]

They are currently in the development version, which we hope to release
soon:

https://mne-tools.github.io/dev/python_reference.html

Eric


On Thu, Oct 5, 2017 at 11:47 AM, Hendrik Santosa <hendrik_santosa at yahoo.com>
wrote:

> Hi Eric,
>
> Thanks for your response.
> Could you please give me the detail information about 'plot-alignment'?
> How to use that function, etc. Also, where I can find the argument for
> "vector' modes in 'apply_inverse'.
>
> Thanks!
>
> Hendrik
>
>
> ------------------------------
> *From:* Eric Larson <larson.eric.d at gmail.com>
> *To:* Hendrik Santosa <hendrik_santosa at yahoo.com>; Discussion and support
> forum for the users of MNE Software <mne_analysis at nmr.mgh.harvard.edu>
> *Sent:* Wednesday, October 4, 2017 8:17 PM
> *Subject:* Re: [Mne_analysis] MNE processing (to get *stc file)
>
> Overall, I have got the results which are not what I expected (the
> frequency and spatial response are different with the channel space).
>
>
> With a loose (or free) orientation inverse, calling `apply_inverse_*`
> without the default pick_ori=None argument will end up taking the absolute
> value. This nonlinearity can change the frequency response, which would
> otherwise be preserved by a linear transformation (which you would have
> with the pick_ori="normal" and "vector" modes)..
>
> As for the spatial distribution being different, you might want to use
> `plot_alignment` to verify your sources, conductor model, and sensors are
> properly aligned.
>
> Eric
>
>
>
>
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