[Mne_analysis] One event shorter than the shortest_event?
Maria Hakonen
maria.hakonen at gmail.com
Wed Oct 17 08:02:16 EDT 2018
External Email - Use Caution
Dear mne-experts,
I have read meg data into python as follows:
raw = mne.io.read_raw_bti(fname, config_fname='config',
rename_channels=False, head_shape_fname='hs_file',preload=True)
Then, I tried to read events:
events = mne.find_events(raw, 'TRIGGER')
However, I get an error:
Removing orphaned offset at the beginning of the file.
635 events found
Events id: [ 34 100 102 104 106 110 112 114 120 200 202 204
206 208
210 220 222 2048]
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-25-5520d6839034> in <module>()
----> 1 events = mne.find_events(raw, 'TRIGGER')
/share/apps2/anaconda/anaconda2/latest/lib/python2.7/site-packages/mne/event.pyc
in find_events(raw, stim_channel, output, consecutive, min_duration,
shortest_event, mask, uint_cast, mask_type, verbose)
/share/apps2/anaconda/anaconda2/latest/lib/python2.7/site-packages/mne/utils.pyc
in verbose(function, *args, **kwargs)
726 with use_log_level(verbose_level):
727 return function(*args, **kwargs)
--> 728 return function(*args, **kwargs)
729
730
/share/apps2/anaconda/anaconda2/latest/lib/python2.7/site-packages/mne/event.pyc
in find_events(raw, stim_channel, output, consecutive, min_duration,
shortest_event, mask, uint_cast, mask_type, verbose)
690 "e.g. x / raw.info['sfreq']. Where x =
1 sample "
691 "shorter than the shortest event "
--> 692 "length." % (n_short_events))
693
694 events_list.append(events)
ValueError: You have 1 events shorter than the shortest_event. These are
very unusual and you may want to set min_duration to a larger value e.g. x
/ raw.info['sfreq']. Where x = 1 sample shorter than the shortest event
length.
Could someone please let me know what might cause an event to be shorter
than the shortest_event? How can I find durations of the events? I looked
raw.info['events'], but it is empty. I also managed to read the events from
another data file, but also in that data raw.info['events'] is empty.
Best,
Maria
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