[Mne_analysis] Sources and labels for reconstruct time course label from EEG
Eric Larson
larson.eric.d at gmail.com
Tue Aug 13 13:05:43 EDT 2019
External Email - Use Caution
>
> - Is it possible to create a volume source space which does not
> creates sources inside white matter ? ( I followed this exemple
> <https://martinos.org/mne/stable/auto_tutorials/source-modeling/plot_forward.html#sphx-glr-auto-tutorials-source-modeling-plot-forward-py>and
> had a look at the API, but I didn't find a way to do what I want )
>
Implicitly, yes. You can choose which volume labels to use (and thus not
include cortex), see for example
https://mne.tools/dev/auto_examples/inverse/plot_mixed_source_space_inverse.html
- When using mne.extract_label_time_course
> <https://martinos.org/mne/stable/generated/mne.extract_label_time_course.html#mne.extract_label_time_course> ,
> how MNE assigns label for volume source space ? I'm working with a custom
> atlas, should I use my specific atlas aparc+asef:mgz when setting the volume
> sources
> <https://martinos.org/mne/stable/generated/mne.setup_volume_source_space.html#mne.setup_volume_source_space>
> as volume label ?
>
We do not currently have an API for this so you'll need to write custom
code. See the ongoing discussion (and some usable code snippets) in:
https://github.com/mne-tools/mne-python/issues/6278
https://github.com/mne-tools/mne-python/issues/6155
HTH,
Eric
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