[Mne_analysis] using the command line interface of mne

[Dan McCloy]

        External Email - Use Caution        

Hi Neeraj,

Note that the commands listed on the page you linked to do *not* use the C libraries. The C library commands have the form mne_* (e.g., mne_browse_raw). The commands on https://mne.tools/stable/generated/commands.html (of the form mne *, note the lack of underscore after mne) are bash commands that underlyingly call the *Python* libraries. The C libraries are installed separately, see here: https://mne.tools/stable/install/mne_c.html

-- dan
Daniel McCloy
http://dan.mccloy.info
Research Scientist
Institute for Learning and Brain Sciences
University of Washington

‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
On Thursday, December 19, 2019 1:43 AM, Alexandre Gramfort <alexandre.gramfort at inria.fr> wrote:

> External Email - Use Caution
>
> hi,
>
> there is so far no command line tool for just filtering the data.
>
> you're welcome to open an issue on the repo to ask for a feature request.
>
> Alex
>
> On Wed, Dec 18, 2019 at 7:51 PM Neeraj Sharma neerajww at gmail.com wrote:
>
> >         External Email - Use Caution
> >
> >
> > Hi Community,
> > I am interested in doing some of the continuous-time data (that is, before epoching) pre-processing using the command line interface. I am hoping this will be less time consuming as it will use the C libraries (?) compared to using the python functions with the code.
> > Can you help me with the functions available? I see the link here https://mne.tools/stable/generated/commands.html but got some doubts in the underlying functionality when the options are used.
> > To start, I will like to do a bandpass filter of EEG data from 0.1 to 40 Hz. I see that there is the -filterorder option but does it use:
> > mne.filter.filter_data(data, Fs, l_freq, h_freq, picks=None,
> > filter_length='auto', l_trans_bandwidth='auto',
> > h_trans_bandwidth='auto', n_jobs=1, method='fir',
> > iir_params=None, copy=True, phase='zero',
> > fir_window='hamming', fir_design='firwin', pad='reflect_limited', verbose=False)
> > If yes, then how can we specify the other arguments of the function, especially, those related to phase delay.
> > Cheers,
> > Neeraj
> >
> > Mne_analysis mailing list
> > Mne_analysis at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>
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