[Mne_analysis] MNE-BIDS conversion:

[Stefan Appelhoff]

        External Email - Use Caution        

Hi Thierry,

what Mainak and Alex say is true ... however, if you are interested in 
using BIDS for epoched data, we strongly encourage you to look into the 
discussion on derivatives (including epochs) for electrophysiology data.

See this Google Doc, were active development of that part of BIDS takes 
place: 
https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw

New contributors are always welcome :-)

Best,

Stefan


On 25.07.19 15:02, Alexandre Gramfort wrote:
>
>         External Email - Use Caution
>
> hi,
>
> indeed there is a BIDS standard only for raw data at this stage. It's not
> specific to mne-bids package.
>
> Alex
>
>
> On Thu, Jul 25, 2019 at 12:05 PM thierry nieus <thierry.nieus at unimi.it 
> <mailto:thierry.nieus at unimi.it>> wrote:
>
>             External Email - Use Caution
>
>     Hi Mainak,
>     thank you for your prompt reply. Indeed, the EpochsFIF file comes
>     from processed TMS/EEG data (Channels x Time x Trials). Thus, from
>     what you are saying MNE-BIDS doesn't seem to be the way to go.
>     Will look for some alternatives then.
>     Thanks anyway
>     Best
>     Thierry
>
>     On Wed, Jul 24, 2019 at 8:18 PM Mainak Jas <mainakjas at gmail.com
>     <mailto:mainakjas at gmail.com>> wrote:
>
>                 External Email - Use Caution
>
>         How did you get the EpochsFIF file? Note that the BIDS format
>         is only for the raw data at the moment and it's not really
>         meant for processed data.
>
>         Mainak
>
>         On Wed, Jul 24, 2019 at 12:10 PM thierry nieus
>         <thierry.nieus at unimi.it <mailto:thierry.nieus at unimi.it>> wrote:
>
>                     External Email - Use Caution
>
>             I apologize for a mistake in my previous ... "Apparently
>             one cannot directly convert a EpochsFIF to a Raw data
>             file.  the BIDS format."
>             Best
>
>
>             On Wed, Jul 24, 2019 at 5:57 PM thierry nieus
>             <thierry.nieus at unimi.it <mailto:thierry.nieus at unimi.it>>
>             wrote:
>
>                 Dear all,
>                 I would like to convert a bunch of FIF files
>                 (EpochsFIF) to the MNE-BIDS format. I found the
>                 example:
>                 https://mne-tools.github.io/mne-bids/index.html that
>                 is relative to the conversion from a Raw format.
>                 Apparently one cannot directly convert a EpochsFIF to
>                 a Raw data file.
>                 So I am wondering if it is possible to convert the
>                 EpochsFIF to Raw to proceed with the conversion to
>                 MNE-BIDS format.
>                 Best regards
>
>
>
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>     Department of Biomedical and Clinical Sciences "Luigi Sacco"
>     University of Milan
>     Phone: +39 02 503 19731
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