[Mne_analysis] [spatiotemporal cluster tests sensors]

[Eric Larson]

        External Email - Use Caution        

In terms of spatio-temporal cluster tests across sensors -- I'm not sure
what in particular you are looking for, but here is an example of a
spatio-temporal EEG sensor cluster test contrasting two conditions:

http://mne-tools.github.io/mne-biomag-group-demo/auto_examples/statistics/plot_sensor_spatio_temporal_cluster_stats.html

Or one with ANOVA:

https://mne-tools.github.io/stable/auto_tutorials/stats-sensor-space/plot_stats_spatio_temporal_cluster_sensors.html

We have some plans to simplify these sorts of things in MNE, since right
now they do require juggling NumPy arrays a bit. Nobody has started it as
far as I know but here is the issue for discussion:

https://github.com/mne-tools/mne-python/issues/4859

Christian Brodbeck maintains a separate repository/project called Eelbrain
that has some more generalized statistical functions that might also make
things easier (I have not personally tried it yet):

https://eelbrain.readthedocs.io/en/stable/reference.html#module-testnd

Eric


On Mon, Jun 3, 2019 at 12:09 PM Virginie van Wassenhove <
virginie.van.wassenhove at gmail.com> wrote:

>         External Email - Use Caution
>
> Hi mne peeps,
>
> this is quick inquiry regarding the timeline and/or efforts needed to
> enable such stastical approaches in mne-python. Is there python code that
> gets close to it on which we could contribute  (I think it is available in
> fieldtrip) or does it require more intense integration?
>
> Thank you for the info! (I launch this email because 3 studies would
> currently benefit from this)
>
> Cheers,
> Virginie van Wassenhove
> *https://brainthemind.com/ <https://brainthemind.com/>*
>
>
>
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