[Mne_analysis] ValueError: stc not compatible with source space.
Yuki
yfujishima1001 at gmail.com
Thu May 2 15:48:24 EDT 2019
External Email - Use Caution
Hi
How can I overcome this error when running mne.extract_label_time_course?
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ValueError: stc not compatible with source space. stc has 4097 time series but there are 4098 vertices in source space
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It seems to me that the problem originates from mne.make_forward_solution:
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Source spaces are in head coordinates.
Checking that the sources are inside the bounding surface and at least 5.0 mm away (will take a few...)
[Parallel(n_jobs=12)]: Using backend LokyBackend with 12 concurrent workers.
[Parallel(n_jobs=12)]: Done 4 out of 12 | elapsed: 1.3s remaining: 2.5s
[Parallel(n_jobs=12)]: Done 7 out of 12 | elapsed: 1.3s remaining: 0.9s
[Parallel(n_jobs=12)]: Done 10 out of 12 | elapsed: 1.3s remaining: 0.3s
[Parallel(n_jobs=12)]: Done 12 out of 12 | elapsed: 1.3s finished
1 source space point omitted because of the 5.0-mm distance limit.
Computing patch statistics...
Patch information added...
[Parallel(n_jobs=12)]: Using backend LokyBackend with 12 concurrent workers.
[Parallel(n_jobs=12)]: Done 4 out of 12 | elapsed: 0.1s remaining: 0.1s
[Parallel(n_jobs=12)]: Done 7 out of 12 | elapsed: 0.1s remaining: 0.0s
[Parallel(n_jobs=12)]: Done 10 out of 12 | elapsed: 0.1s remaining: 0.0s
[Parallel(n_jobs=12)]: Done 12 out of 12 | elapsed: 0.1s finished
1 source space point omitted because it is outside the inner skull surface.
Computing patch statistics...
Patch information added...
Thank you for waiting.
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So can't extract_label_time_course be executed when the number of grid in SourceEstimate(originally Forward model) does not match the number in SourceSpaces? Is there any way to get around this?
Thanks.
Best,
Yuki
--
Yuki Fujishima
Kyushu University
Department of Medicine
School of Medicine Class of 2020
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