[Mne_analysis] DICS_wrong_hemisphere_reconstruction {Disarmed}

Eric Larson larson.eric.d at gmail.com
Tue Dec 1 08:51:10 EST 2020
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Those seem okay. Also check to make sure your FieldTrip DICS result was not
affected by this bug:

https://secure-web.cisco.com/145Qiy-fcTYp--8U0zxCpVEQ6ubovMi7AYnO_K-x1llXqqS_rAQSqBNJLpQJV_QhUBmXg9kSTeYnPQPe_yfB3JmSxdHnenQSjIVQezrL25BnH1Hqu_SjCSFPdlZSZ_Xoz9Ou2bvSbjTDfIp8REjy2rMCuej6y-zRehn90FL9UqmXGyRURFLW-NpeFS8STWIkS4ipwMfWH2wq1YBbbMrHTaa2tPb5RTuNJjHIxs9X4waAbzaacpq4jY3wH3giJSXwelldnd_KCdmiZMyk5afdgPQ/https%3A%2F%2Fgithub.com%2Ffieldtrip%2Ffieldtrip%2Fpull%2F1599

We are currently working on making sure FieldTrip and MNE produce
consistent beamforminng results -- so far LCMV is consistent now but DICS
is still a work in progress.

Eric


On Tue, Dec 1, 2020 at 7:52 AM Alexandre Gramfort <
alexandre.gramfort at inria.fr> wrote:

>         External Email - Use Caution
>
> hi,
>
> it's really hard to tell without looking at the 2 codes (fieldtrip and mne)
>
> first thing I would check is that the forward models are valid using
>
> *MailScanner has detected a possible fraud attempt from
> "secure-web.cisco.com" claiming to be*
> https://secure-web.cisco.com/1g_ktL2Z7SETFdKtu9_hK94q_j_1yYWoa0CIbz3faSko_x7lvJ04bnAZUu4UrR9r4XPg3esYejH-J68PEch84yTytI4Ez3SDSIv6rp2o2Tz9flfUjQX1yxkjkoaL2ME9CXLMmFEweQz1Gt9-coEjLBX98vlxY1nFXLxNCpszSkDGj0E02rNDr7zlXgvzM-Xk8DMrDMsUI3ZwxIr1MkiHGpwXINqB7l_3OdR00-yUcvCl4bqVh-__hhVURCVU84k3sK0uyh3tV4VEOD_moYiGN4w/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html
> <https://secure-web.cisco.com/1P9dcoglvPsP0-6DtSXpF95SCMJ5_FtyShUylLftAdd2sWcyXtonMBSWqYJzu7G0hsC286na11HyhIU7w5X80X4VF0_7SwbUfnO0l9u8ekCKl-p4iuf0wKcf1onz3sK4eCvqWjaLB7aiZAyesSDdWa51eR5i-7QUS2zRgdWb6DvRGwZWVIxEpBt1dPn7A0_2RmTohpXuaN9A1-i2SjJaox26TRAVDPHB399WvgYoaI40TkeSxKsv9PB43SIIeSRaiUofYn96AtcwmwLiTi18a_w/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html>
>
> Alex
>
>
> On Tue, Dec 1, 2020 at 1:16 PM Edoardo Pinzuti <edoardo.pinzuti at gmail.com>
> wrote:
>
>>         External Email - Use Caution
>>
>> Dear Mne team,
>>
>> I am trying to reproduce a DICS source reconstruction in beta band
>> obtained in Fieldtrip, to validate the pipeline. I get a weird  result
>> because the expected right frontal activation that occurs in Fieldtrip is
>> located in the left hemisphere in MNE (see the pictures). It looks like the
>> hemispheres are swapped. (Fieldtrip result match fmri activation on the
>> same study).
>>
>> Do you have any idea what could be causing this?
>>
>> Thanks
>> Edoardo
>> _______________________________________________
>> Mne_analysis mailing list
>> Mne_analysis at nmr.mgh.harvard.edu
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>> <https://secure-web.cisco.com/1XZQs6Tz5aUmdk7D92fuWwfznEkpX2YzQT-SkE1Di6Zfwg7d5xINvODtL9akeyijBjAbNT306UPhKuBhSfBa1QHbuKrbZnOUauo48Z2e_WxNzZ-iJcf0I_f9ahCmvALITT6bbAtTdnryzdQLeh-bOwSFp5QV_MBicvA_DspFQXfgPTsGh0dDdJQIUKFNQm9uUFirBc0NdSDUTSG15LftMVo23GD2SIFCCMQMnSzd-xLTTdTX9VjWPkNLJaPSTLKMAr5KD67r-A5aEizI1T66hSg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis


On Tue, Dec 1, 2020 at 8:49 AM Edoardo Pinzuti <edoardo.pinzuti at gmail.com>
wrote:

>         External Email - Use Caution
>
> Hi Alex,
>
> I used the function you suggest, it looks fine no ?
>
> Il giorno mar 1 dic 2020 alle ore 13:52 Alexandre Gramfort <
> alexandre.gramfort at inria.fr> ha scritto:
>
>>         External Email - Use Caution
>>
>> hi,
>>
>> it's really hard to tell without looking at the 2 codes (fieldtrip and
>> mne)
>>
>> first thing I would check is that the forward models are valid using
>>
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/1g_ktL2Z7SETFdKtu9_hK94q_j_1yYWoa0CIbz3faSko_x7lvJ04bnAZUu4UrR9r4XPg3esYejH-J68PEch84yTytI4Ez3SDSIv6rp2o2Tz9flfUjQX1yxkjkoaL2ME9CXLMmFEweQz1Gt9-coEjLBX98vlxY1nFXLxNCpszSkDGj0E02rNDr7zlXgvzM-Xk8DMrDMsUI3ZwxIr1MkiHGpwXINqB7l_3OdR00-yUcvCl4bqVh-__hhVURCVU84k3sK0uyh3tV4VEOD_moYiGN4w/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html
>> <https://secure-web.cisco.com/1P9dcoglvPsP0-6DtSXpF95SCMJ5_FtyShUylLftAdd2sWcyXtonMBSWqYJzu7G0hsC286na11HyhIU7w5X80X4VF0_7SwbUfnO0l9u8ekCKl-p4iuf0wKcf1onz3sK4eCvqWjaLB7aiZAyesSDdWa51eR5i-7QUS2zRgdWb6DvRGwZWVIxEpBt1dPn7A0_2RmTohpXuaN9A1-i2SjJaox26TRAVDPHB399WvgYoaI40TkeSxKsv9PB43SIIeSRaiUofYn96AtcwmwLiTi18a_w/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html>
>>
>> Alex
>>
>>
>> On Tue, Dec 1, 2020 at 1:16 PM Edoardo Pinzuti <edoardo.pinzuti at gmail.com>
>> wrote:
>>
>>>         External Email - Use Caution
>>>
>>> Dear Mne team,
>>>
>>> I am trying to reproduce a DICS source reconstruction in beta band
>>> obtained in Fieldtrip, to validate the pipeline. I get a weird  result
>>> because the expected right frontal activation that occurs in Fieldtrip is
>>> located in the left hemisphere in MNE (see the pictures). It looks like the
>>> hemispheres are swapped. (Fieldtrip result match fmri activation on the
>>> same study).
>>>
>>> Do you have any idea what could be causing this?
>>>
>>> Thanks
>>> Edoardo
>>> _______________________________________________
>>> Mne_analysis mailing list
>>> Mne_analysis at nmr.mgh.harvard.edu
>>> *MailScanner has detected a possible fraud attempt from
>>> "secure-web.cisco.com" claiming to be*
>>> https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>>> <https://secure-web.cisco.com/1XZQs6Tz5aUmdk7D92fuWwfznEkpX2YzQT-SkE1Di6Zfwg7d5xINvODtL9akeyijBjAbNT306UPhKuBhSfBa1QHbuKrbZnOUauo48Z2e_WxNzZ-iJcf0I_f9ahCmvALITT6bbAtTdnryzdQLeh-bOwSFp5QV_MBicvA_DspFQXfgPTsGh0dDdJQIUKFNQm9uUFirBc0NdSDUTSG15LftMVo23GD2SIFCCMQMnSzd-xLTTdTX9VjWPkNLJaPSTLKMAr5KD67r-A5aEizI1T66hSg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>>
>> _______________________________________________
>> Mne_analysis mailing list
>> Mne_analysis at nmr.mgh.harvard.edu
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>> <https://secure-web.cisco.com/1FkGDtupLVi1XVxr8SB4EkjR9YEduUL6tsicnEi9Fk8g-dm-CCW-FuNF4bCHkRR_QKHzi7jXrhcZwi1yPBtc1i9tNGXEPXf7qolmNC7BxxANsZDgktxPQYG8qtlTSVWCAuBXXr5RL-zl2XrZOx7g2-jUpkwMdcnZpm4jy89Sxq1Lvczs5m5mCxbpF1ZB4kUlch9UIuXkqDsq4vTgQdQoy_iN5AU8yKOgnSJwzl0Z_FdAc4UnX2qK95zRFbrRwVDVcYWJFAANZUVFk7jaAKoeuBw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
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