[Mne_analysis] DICS_wrong_hemisphere_reconstruction {Disarmed}
Edoardo Pinzuti
edoardo.pinzuti at gmail.com
Wed Dec 2 11:15:40 EST 2020
External Email - Use Caution
We checked with the lcmv also in Fieldtrip and results were confirmed, so
there was no effect of the DICS bug. I still get the maximum peak frontal
but in the opposite hemisphere. Do you have another idea where there could
be a flip right/ left ? mri conventions, coordinates and so on
thanks
Il giorno mar 1 dic 2020 alle ore 14:54 Eric Larson <larson.eric.d at gmail.com>
ha scritto:
> External Email - Use Caution
>
> Those seem okay. Also check to make sure your FieldTrip DICS result was
> not affected by this bug:
>
> *MailScanner has detected a possible fraud attempt from
> "secure-web.cisco.com" claiming to be*
> https://secure-web.cisco.com/11giVB1PaRL71LhEnAWHB5mLGn3L8M8KPwlY4WssgM2120W6s_u1aEXqqWapZcYW6_x1SehsV1Ihdgr2CEDbELukvlHHLyOsnSv_uN8D-Tf_vCT1xkEpgnBW0kn_90pDpSKRVFyH5mxqZkoP8rLzZSNaj2PBbTeWeeYIMGHHh7LOikzf4dJkP0dm2Z9Jb2Q9eoguejlHrH_Eha5gIaGrEAPr2sEl49CyFPGMR5qNlTiLrc2u7SqdIpQu7Sy-Ts8c91lOuEHsoHbLtzXfdqLNzUw/https%3A%2F%2Fgithub.com%2Ffieldtrip%2Ffieldtrip%2Fpull%2F1599
> <https://secure-web.cisco.com/145Qiy-fcTYp--8U0zxCpVEQ6ubovMi7AYnO_K-x1llXqqS_rAQSqBNJLpQJV_QhUBmXg9kSTeYnPQPe_yfB3JmSxdHnenQSjIVQezrL25BnH1Hqu_SjCSFPdlZSZ_Xoz9Ou2bvSbjTDfIp8REjy2rMCuej6y-zRehn90FL9UqmXGyRURFLW-NpeFS8STWIkS4ipwMfWH2wq1YBbbMrHTaa2tPb5RTuNJjHIxs9X4waAbzaacpq4jY3wH3giJSXwelldnd_KCdmiZMyk5afdgPQ/https%3A%2F%2Fgithub.com%2Ffieldtrip%2Ffieldtrip%2Fpull%2F1599>
>
> We are currently working on making sure FieldTrip and MNE produce
> consistent beamforminng results -- so far LCMV is consistent now but DICS
> is still a work in progress.
>
> Eric
>
>
> On Tue, Dec 1, 2020 at 7:52 AM Alexandre Gramfort <
> alexandre.gramfort at inria.fr> wrote:
>
>> External Email - Use Caution
>>
>> hi,
>>
>> it's really hard to tell without looking at the 2 codes (fieldtrip and
>> mne)
>>
>> first thing I would check is that the forward models are valid using
>>
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/1lIZzvAYuPUAsX-ckJ40pUNSRfE3Inq-K7nqhgk1kuhjf7_5JQGtXSUXFBb_Jv2nik2ttynQbSsChQc30z9YcyqWH7WjVCVrnaw8n6pbSSZlG5D_HbGWSACXfeNpd1znJHWDAeIFIaNC1_ZYh8vLsTFP3T2GnQE8bmeB2v08P3FIOVOPwNu9t23Lhm_oG9DF0NvX31RPArVapPao_E0qKh1GzbkeG54H_7aUWRxuczjc3TPgWVEBOqTPeU3fQAmKiOYXB-PW0Z_65oHTKnFwQQQ/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html
>> <https://secure-web.cisco.com/1P9dcoglvPsP0-6DtSXpF95SCMJ5_FtyShUylLftAdd2sWcyXtonMBSWqYJzu7G0hsC286na11HyhIU7w5X80X4VF0_7SwbUfnO0l9u8ekCKl-p4iuf0wKcf1onz3sK4eCvqWjaLB7aiZAyesSDdWa51eR5i-7QUS2zRgdWb6DvRGwZWVIxEpBt1dPn7A0_2RmTohpXuaN9A1-i2SjJaox26TRAVDPHB399WvgYoaI40TkeSxKsv9PB43SIIeSRaiUofYn96AtcwmwLiTi18a_w/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html>
>>
>> Alex
>>
>>
>> On Tue, Dec 1, 2020 at 1:16 PM Edoardo Pinzuti <edoardo.pinzuti at gmail.com>
>> wrote:
>>
>>> External Email - Use Caution
>>>
>>> Dear Mne team,
>>>
>>> I am trying to reproduce a DICS source reconstruction in beta band
>>> obtained in Fieldtrip, to validate the pipeline. I get a weird result
>>> because the expected right frontal activation that occurs in Fieldtrip is
>>> located in the left hemisphere in MNE (see the pictures). It looks like the
>>> hemispheres are swapped. (Fieldtrip result match fmri activation on the
>>> same study).
>>>
>>> Do you have any idea what could be causing this?
>>>
>>> Thanks
>>> Edoardo
>>> _______________________________________________
>>> Mne_analysis mailing list
>>> Mne_analysis at nmr.mgh.harvard.edu
>>> *MailScanner has detected a possible fraud attempt from
>>> "secure-web.cisco.com" claiming to be*
>>> https://secure-web.cisco.com/1VfqgBmJc5oTH7vqx5dQc_wpqa4WPdzR6wif4QyzJX3vChxSyyWtvrtTeM7YSo6iNu4-N_D6ePo399nvo5FJe64gNDRhY6pmWzOK0VirS5W165-hd6JY9lrOpucHut43o128gob2m7_4129XRRSKWMtbBUWVfXCG20tvodit2JYl4gtPHR-9lhct6hY_NDJe359Vi1eJOZzo4KV_ZUx2pii9mFiGE-55SmHTSDtM7EoLpKdfWDq_DyFkAUJwbm11hwAJv46T1Jo-TjEYX-rwebA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>>> <https://secure-web.cisco.com/1XZQs6Tz5aUmdk7D92fuWwfznEkpX2YzQT-SkE1Di6Zfwg7d5xINvODtL9akeyijBjAbNT306UPhKuBhSfBa1QHbuKrbZnOUauo48Z2e_WxNzZ-iJcf0I_f9ahCmvALITT6bbAtTdnryzdQLeh-bOwSFp5QV_MBicvA_DspFQXfgPTsGh0dDdJQIUKFNQm9uUFirBc0NdSDUTSG15LftMVo23GD2SIFCCMQMnSzd-xLTTdTX9VjWPkNLJaPSTLKMAr5KD67r-A5aEizI1T66hSg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>>
>> _______________________________________________
>> Mne_analysis mailing list
>> Mne_analysis at nmr.mgh.harvard.edu
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/1VfqgBmJc5oTH7vqx5dQc_wpqa4WPdzR6wif4QyzJX3vChxSyyWtvrtTeM7YSo6iNu4-N_D6ePo399nvo5FJe64gNDRhY6pmWzOK0VirS5W165-hd6JY9lrOpucHut43o128gob2m7_4129XRRSKWMtbBUWVfXCG20tvodit2JYl4gtPHR-9lhct6hY_NDJe359Vi1eJOZzo4KV_ZUx2pii9mFiGE-55SmHTSDtM7EoLpKdfWDq_DyFkAUJwbm11hwAJv46T1Jo-TjEYX-rwebA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>> <https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>
>
> On Tue, Dec 1, 2020 at 8:49 AM Edoardo Pinzuti <edoardo.pinzuti at gmail.com>
> wrote:
>
>> External Email - Use Caution
>>
>> Hi Alex,
>>
>> I used the function you suggest, it looks fine no ?
>>
>> Il giorno mar 1 dic 2020 alle ore 13:52 Alexandre Gramfort <
>> alexandre.gramfort at inria.fr> ha scritto:
>>
>>> External Email - Use Caution
>>>
>>> hi,
>>>
>>> it's really hard to tell without looking at the 2 codes (fieldtrip and
>>> mne)
>>>
>>> first thing I would check is that the forward models are valid using
>>>
>>> *MailScanner has detected a possible fraud attempt from
>>> "secure-web.cisco.com" claiming to be*
>>> https://secure-web.cisco.com/1lIZzvAYuPUAsX-ckJ40pUNSRfE3Inq-K7nqhgk1kuhjf7_5JQGtXSUXFBb_Jv2nik2ttynQbSsChQc30z9YcyqWH7WjVCVrnaw8n6pbSSZlG5D_HbGWSACXfeNpd1znJHWDAeIFIaNC1_ZYh8vLsTFP3T2GnQE8bmeB2v08P3FIOVOPwNu9t23Lhm_oG9DF0NvX31RPArVapPao_E0qKh1GzbkeG54H_7aUWRxuczjc3TPgWVEBOqTPeU3fQAmKiOYXB-PW0Z_65oHTKnFwQQQ/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html
>>> <https://secure-web.cisco.com/1P9dcoglvPsP0-6DtSXpF95SCMJ5_FtyShUylLftAdd2sWcyXtonMBSWqYJzu7G0hsC286na11HyhIU7w5X80X4VF0_7SwbUfnO0l9u8ekCKl-p4iuf0wKcf1onz3sK4eCvqWjaLB7aiZAyesSDdWa51eR5i-7QUS2zRgdWb6DvRGwZWVIxEpBt1dPn7A0_2RmTohpXuaN9A1-i2SjJaox26TRAVDPHB399WvgYoaI40TkeSxKsv9PB43SIIeSRaiUofYn96AtcwmwLiTi18a_w/https%3A%2F%2Fmne.tools%2Fstable%2Fgenerated%2Fmne.sensitivity_map.html>
>>>
>>> Alex
>>>
>>>
>>> On Tue, Dec 1, 2020 at 1:16 PM Edoardo Pinzuti <
>>> edoardo.pinzuti at gmail.com> wrote:
>>>
>>>> External Email - Use Caution
>>>>
>>>> Dear Mne team,
>>>>
>>>> I am trying to reproduce a DICS source reconstruction in beta band
>>>> obtained in Fieldtrip, to validate the pipeline. I get a weird result
>>>> because the expected right frontal activation that occurs in Fieldtrip is
>>>> located in the left hemisphere in MNE (see the pictures). It looks like the
>>>> hemispheres are swapped. (Fieldtrip result match fmri activation on the
>>>> same study).
>>>>
>>>> Do you have any idea what could be causing this?
>>>>
>>>> Thanks
>>>> Edoardo
>>>> _______________________________________________
>>>> Mne_analysis mailing list
>>>> Mne_analysis at nmr.mgh.harvard.edu
>>>> *MailScanner has detected a possible fraud attempt from
>>>> "secure-web.cisco.com" claiming to be*
>>>> https://secure-web.cisco.com/1VfqgBmJc5oTH7vqx5dQc_wpqa4WPdzR6wif4QyzJX3vChxSyyWtvrtTeM7YSo6iNu4-N_D6ePo399nvo5FJe64gNDRhY6pmWzOK0VirS5W165-hd6JY9lrOpucHut43o128gob2m7_4129XRRSKWMtbBUWVfXCG20tvodit2JYl4gtPHR-9lhct6hY_NDJe359Vi1eJOZzo4KV_ZUx2pii9mFiGE-55SmHTSDtM7EoLpKdfWDq_DyFkAUJwbm11hwAJv46T1Jo-TjEYX-rwebA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>>>> <https://secure-web.cisco.com/1XZQs6Tz5aUmdk7D92fuWwfznEkpX2YzQT-SkE1Di6Zfwg7d5xINvODtL9akeyijBjAbNT306UPhKuBhSfBa1QHbuKrbZnOUauo48Z2e_WxNzZ-iJcf0I_f9ahCmvALITT6bbAtTdnryzdQLeh-bOwSFp5QV_MBicvA_DspFQXfgPTsGh0dDdJQIUKFNQm9uUFirBc0NdSDUTSG15LftMVo23GD2SIFCCMQMnSzd-xLTTdTX9VjWPkNLJaPSTLKMAr5KD67r-A5aEizI1T66hSg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>>>
>>> _______________________________________________
>>> Mne_analysis mailing list
>>> Mne_analysis at nmr.mgh.harvard.edu
>>> *MailScanner has detected a possible fraud attempt from
>>> "secure-web.cisco.com" claiming to be*
>>> https://secure-web.cisco.com/1VfqgBmJc5oTH7vqx5dQc_wpqa4WPdzR6wif4QyzJX3vChxSyyWtvrtTeM7YSo6iNu4-N_D6ePo399nvo5FJe64gNDRhY6pmWzOK0VirS5W165-hd6JY9lrOpucHut43o128gob2m7_4129XRRSKWMtbBUWVfXCG20tvodit2JYl4gtPHR-9lhct6hY_NDJe359Vi1eJOZzo4KV_ZUx2pii9mFiGE-55SmHTSDtM7EoLpKdfWDq_DyFkAUJwbm11hwAJv46T1Jo-TjEYX-rwebA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>>> <https://secure-web.cisco.com/1FkGDtupLVi1XVxr8SB4EkjR9YEduUL6tsicnEi9Fk8g-dm-CCW-FuNF4bCHkRR_QKHzi7jXrhcZwi1yPBtc1i9tNGXEPXf7qolmNC7BxxANsZDgktxPQYG8qtlTSVWCAuBXXr5RL-zl2XrZOx7g2-jUpkwMdcnZpm4jy89Sxq1Lvczs5m5mCxbpF1ZB4kUlch9UIuXkqDsq4vTgQdQoy_iN5AU8yKOgnSJwzl0Z_FdAc4UnX2qK95zRFbrRwVDVcYWJFAANZUVFk7jaAKoeuBw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>>
>> _______________________________________________
>> Mne_analysis mailing list
>> Mne_analysis at nmr.mgh.harvard.edu
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/1VfqgBmJc5oTH7vqx5dQc_wpqa4WPdzR6wif4QyzJX3vChxSyyWtvrtTeM7YSo6iNu4-N_D6ePo399nvo5FJe64gNDRhY6pmWzOK0VirS5W165-hd6JY9lrOpucHut43o128gob2m7_4129XRRSKWMtbBUWVfXCG20tvodit2JYl4gtPHR-9lhct6hY_NDJe359Vi1eJOZzo4KV_ZUx2pii9mFiGE-55SmHTSDtM7EoLpKdfWDq_DyFkAUJwbm11hwAJv46T1Jo-TjEYX-rwebA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
>> <https://secure-web.cisco.com/15z2DpZold9TVB0CrVNL-dXpPHPArSjZ1sOAu3V3t7wMNiQtlHXXzgIeppi8o0LDY55brgRSS7YnFlMR7ToLyWUHeTVEeKCiBc1z3jm0KfKJwk4hgDd-3-fPEL87Cvl0eQzi7qzyjeG5DIIPFWL1s7YSJzmyaMpDiGTJvNnkhZNCZynq3fETRbBdcwad0x4dfiblCOTG3PScuPBVnLE0IdObEPbKwUCACekVPhV7u3xd_SE4WrW2JXRnZJxOjSMZva1KJqyFDfsuRoMQjDarElA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis>
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://secure-web.cisco.com/1VfqgBmJc5oTH7vqx5dQc_wpqa4WPdzR6wif4QyzJX3vChxSyyWtvrtTeM7YSo6iNu4-N_D6ePo399nvo5FJe64gNDRhY6pmWzOK0VirS5W165-hd6JY9lrOpucHut43o128gob2m7_4129XRRSKWMtbBUWVfXCG20tvodit2JYl4gtPHR-9lhct6hY_NDJe359Vi1eJOZzo4KV_ZUx2pii9mFiGE-55SmHTSDtM7EoLpKdfWDq_DyFkAUJwbm11hwAJv46T1Jo-TjEYX-rwebA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Fmne_analysis
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