[Mne_analysis] Cluster test adjacency matrix {Disarmed}

[Анна Табуева]

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Hi Eric and Dip,

Thank you very much for your answers!

I submitted the feature request issue on /mne-python repository so you can
track it via the link: https://secure-web.cisco.com/1jj53nAz2Njw9LZmEpmWrlRxBteIF1QhZLdJfDBM-Ej714_x4nzgpMC6vOj5B4uVJGRBhYj96kbK8zHOpGPz-2Fh76xSDbHKLy82PKxRjKCY81m0ku9GuvW_5B3bGbbHZnhRGoXa3xi3uhk-Mqsv8sbNrib5f9jgu4FZw12JOO1B9mu_g1jXrn2T5iNCq0o0VimU2dwQWNDUEVT-yLsG0slNG2kngkWbo8RwfxheSQCQ3E5r5FvihESZ3KdRUl5n5A5dyna2yCRoeVrj_QfUA9A/https%3A%2F%2Fgithub.com%2Fmne-tools%2Fmne-python%2Fissues%2F8646

Best,
Anna



пт, 4 дек. 2020 г. в 20:32, Eric Larson <larson.eric.d at gmail.com>:

>         External Email - Use Caution
>
> We don't currently have a function for this but we could add one fairly
> easily I think based on the FreeSurfer triangulations. Could you open a
> GitHub issue about it?
>
> Eric
>
>
> On Thu, Dec 3, 2020 at 5:15 AM Анна Табуева <anntabueva at gmail.com> wrote:
>
>>         External Email - Use Caution
>>
>> Dear MNE Community!
>>
>> In my research I intend to perform the 1-sample cluster permutation test
>> on the time course data extracted with PCA according to Desikan-Killiany
>> cortical atlas.
>> In order to perform the cluster test correctly I should provide the
>> information on spatial connectivity of the 68 extracted Desikan-Killiany
>> cortical labels (i.e., the adjacency matrix).
>> However, while there are well defined functions such as
>> mne.find_ch_connectivity or mne.spatial_src_connectivity, I had no luck
>> figuring out any method to calculate the adjacency matrix for labels.
>> Do you have any ideas on how I should treat the adjacency matrix problem
>> in the cluster test if I use parcellised cortical labels?
>>
>> Great thank you in advance!
>>
>> Anna
>> --
>> Anna Tabueva
>> Junior Research Fellow
>> Developmental Behavioral Genetics Laboratory
>> Psychological Institute of Russian Academy of Education
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-- 
Anna Tabueva
Junior Research Fellow
Developmental Behavioral Genetics Laboratory
Psychological Institute of Russian Academy of Education
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