[Mne_analysis] CSD might break montage

[Dan McCloy]

        External Email - Use Caution        

Hi Sammi,
pip install -U https://github.com/mne-tools/mne-python/archive/master.zip
will get you the latest development version, which includes the fix you want.

-- dan
Daniel McCloy
https://dan.mccloy.info
Research Scientist
Institute for Learning and Brain Sciences
University of Washington

‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
On Monday, June 29, 2020 5:26 AM, Sammi Chekroud <sammi.r.chekroud at gmail.com> wrote:

> Hi Dan,
>
> I saw that a fix for this was merged - what's the best way of getting this into the version of mne that i'm using at the moment? im running 0.20.5 at the moment
>
> sorry to bug about this!
> Sammi
>
> On Thu, 25 Jun 2020 at 19:35, Dan McCloy <dan at mccloy.info> wrote:
>
>> External Email - Use Caution
>>
>> This looks to be a genuine bug, which I think I've narrowed down to mne.channels.layout.generate_2d_layout. I'll work on a fix. Gabriel, Sammi, if you have GitHub accounts you can subscribe to this issue to track progress: https://github.com/mne-tools/mne-python/issues/7933
>>
>> -- dan
>> Daniel McCloy
>> https://dan.mccloy.info
>> Research Scientist
>> Institute for Learning and Brain Sciences
>> University of Washington
>>
>> ‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
>> On Thursday, June 25, 2020 6:10 AM, Sammi Chekroud <sammi.r.chekroud at gmail.com> wrote:
>>
>>> External Email - Use Caution
>>>
>>> i had the same problem with evoked.plot_joint when i tried using the CSD routine on epoched data then averaging into an Evoked object -- topography wouldn't plot, just got a black circle in the bottom left of the panel where a topomap should be. the evoked plot at the bottom plotted fine though
>>>
>>> On Thu, 25 Jun 2020 at 14:07, Gabriel Weindel <gabriel.weindel at gmail.com> wrote:
>>>
>>>> External Email - Use Caution
>>>>
>>>> I was on the dev branch after the commit #7863 on CSD on github, but
>>>> even when updating to the master branch with the link you provided I
>>>> still have the same error.
>>>>
>>>> I tried with the example in
>>>> https://mne.tools/dev/auto_examples/preprocessing/plot_eeg_csd.html#sphx-glr-auto-examples-preprocessing-plot-eeg-csd-py
>>>> Topomap works (as for my data actually) but when I use
>>>> mne.viz.plot_compare_evokeds([evoked_csd], picks='csd', axes='topo')
>>>> I have the same error. So it seems to be specific to plot_compare_evokeds
>>>>
>>>> I posted a gist in case it's spares you or others some time
>>>> https://gist.github.com/GWeindel/2af99b1a3b07d2d75d8e27cbacdf741e
>>>>
>>>> Best,
>>>> Gabriel
>>>>
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