[Mne_analysis] [ANN] MNE-BIDS 0.5
Richard Höchenberger
richard.hoechenberger at gmail.com
Thu Oct 22 08:33:31 EDT 2020
External Email - Use Caution
Hello!
After more than 6 months of hard work, we are very pleased to announce today's
release of MNE-BIDS version 0.5! 😁 🎉 🥳
What is MNE-BIDS?
=================
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible
datasets with the help of MNE-Python. The project website is located at
https://mne.tools/mne-bids
Why would you want it?
======================
MNE-BIDS links BIDS and MNE-Python with the goal to make your analyses faster
to code, more robust, and facilitate data and code sharing with co-workers and
collaborators.
So, what's new in 0.5?
======================
This is a big release with lots of changes, many of them breaking existing
code. But do not fear: migration is easy, and you will love what we have been
cooking for you!
Notable changes
---------------
- We introduce BIDSPath, a new class for all BIDS file and folder operations.
All functions in MNE-BIDS that previously accepted filenames and folder
locations (e.g. bids_root) have been updated to work with BIDSPath. Others
have been removed. Consequently, you will need to update your existing code,
too. Don’t worry – it’s going to be a breeze! 🤗 Follow
https://mne.tools/mne-bids/stable/use.html#mastering-bidspath and you'll be
fine!
- The new function make_report() can help you populate a paragraph of your next
paper’s methods section!
- You can now interactively mark channels as bad using mark_bad_channels().
- Elekta/Neuromag/MEGIN fine-calibration and crosstalk files can now be stored
in your BIDS dataset via write_meg_calibration() and write_meg_crosstalk().
- When writing a raw file that contains annotations, these will now be
converted to and stored as events by write_raw_bids().
- MNE-BIDS now requires MNE-Python 0.21.
- We have reworked large parts of the website and documentation.
Installation
============
We provide pip- and conda-installable packages.
Please follow the instructions at
https://mne.tools/mne-bids/stable/install.html
(Note that it might take a while for the packages to become available on all
mirrors, so if you're not seeing 0.5 yet, try again in another hour 😇)
Asking for feedback
===================
If you're experiencing any issues with this release of MNE-BIDS, please do not
hesitate to get in touch with us. You may open an issue on our GitHub issue
tracker at https://github.com/mne-tools/mne-bids/issues
Contributors
============
The following people have contributed to this release of MNE-BIDS:
- Adam Li
- Alexandre Gramfort
- Alex Rockhill
- Austin Hurst
- Evgenii Kalenkovich
- Mainak Jas
- Richard Höchenberger
- Robert Luke
- Stefan Appelhoff
Thank you all, and take care!
Richard
on behalf of the MNE-BIDS team
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