[Mne_analysis] conda upgrade error
Megan Schendel
mschendel at mrn.org
Wed Sep 2 19:53:06 EDT 2020
External Email - Use Caution
HI all,
I'm wondering if this is an error because I already have things installed.
The dipy page says to uninstall dipy before installing using pip.
Are there separate instructions for upgrades? I realized I'm trying to
follow install instructions.
>>> import dipy
>>> dipy.__file__
'/export/research/analysis/human/jstephen/shared/programs/python/anaconda3/lib/python3.5/site-packages/dipy/__init__.py'
I also tried to do the upgrade after removing the dipy line from the .yml
file, but I got errors relating to PyQt
Collecting PyQt5>=5.10
Using cached PyQt5-5.15.0.tar.gz (3.3 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'error'
I may have more details on the error tomorrow. I lost my connection to the
remote server I'm working on.
Thanks,
Megan
MEG Technician
The Mind Research Network
1101 Yale Blvd. NE
Albuquerque, New Mexico 87106
On Wed, Sep 2, 2020 at 4:58 PM Megan Schendel <mschendel at mrn.org> wrote:
> Hi all,
> I am attempting to follow upgrade instructions. I was able to upgrade
> conda, and I succeeded in using curl to get the yml file.
> However, when I try the conda env update, I eventually get an error when
> the update gets to dipy. See below. Any suggestions?
>
> Thanks for your help,
> Megan
>
> conda env update --file environment.yml
> Using Anaconda Cloud api site https://api.anaconda.org
> Fetching package metadata ...........
> Solving package specifications: .
> ...
> ERROR: Invalid requirement: 'dipy --only-binary dipy'
>
> conda --version && python --version
> conda 4.3.30
> Python 3.8.5
>
> Here is the contents of my environment.yml file:
>
> name: mne
> channels:
> - defaults
> dependencies:
> - python>=3.8
> - pip
> - numpy
> - scipy
> - matplotlib
> - numba
> - pandas
> - xlrd
> - scikit-learn
> - h5py
> - pillow
> - statsmodels
> - jupyter
> - joblib
> - psutil
> - numexpr
> - traits
> - pyface
> - traitsui
> - imageio
> - tqdm
> - spyder-kernels
> - pip:
> - mne
> - imageio-ffmpeg>=0.4.1
> - vtk>=9.0.1
> - pyvista>=0.24
> - pyvistaqt
> - mayavi
> - PySurfer[save_movie]
> - dipy --only-binary dipy
> - nibabel
> - nilearn
> - neo
> - python-picard
> - PyQt5>=5.10,<5.14; platform_system == "Darwin"
> - PyQt5>=5.10; platform_system != "Darwin"
>
> MEG Technician
> The Mind Research Network
> 1101 Yale Blvd. NE
> Albuquerque, New Mexico 87106
>
>
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