[Mne_analysis] conda upgrade error
mschendel at mrn.org
Wed Sep 2 19:53:06 EDT 2020
External Email - Use Caution
I'm wondering if this is an error because I already have things installed.
The dipy page says to uninstall dipy before installing using pip.
Are there separate instructions for upgrades? I realized I'm trying to
follow install instructions.
>>> import dipy
I also tried to do the upgrade after removing the dipy line from the .yml
file, but I got errors relating to PyQt
Using cached PyQt5-5.15.0.tar.gz (3.3 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'error'
I may have more details on the error tomorrow. I lost my connection to the
remote server I'm working on.
The Mind Research Network
1101 Yale Blvd. NE
Albuquerque, New Mexico 87106
On Wed, Sep 2, 2020 at 4:58 PM Megan Schendel <mschendel at mrn.org> wrote:
> Hi all,
> I am attempting to follow upgrade instructions. I was able to upgrade
> conda, and I succeeded in using curl to get the yml file.
> However, when I try the conda env update, I eventually get an error when
> the update gets to dipy. See below. Any suggestions?
> Thanks for your help,
> conda env update --file environment.yml
> Using Anaconda Cloud api site https://api.anaconda.org
> Fetching package metadata ...........
> Solving package specifications: .
> ERROR: Invalid requirement: 'dipy --only-binary dipy'
> conda --version && python --version
> conda 4.3.30
> Python 3.8.5
> Here is the contents of my environment.yml file:
> name: mne
> - defaults
> - python>=3.8
> - pip
> - numpy
> - scipy
> - matplotlib
> - numba
> - pandas
> - xlrd
> - scikit-learn
> - h5py
> - pillow
> - statsmodels
> - jupyter
> - joblib
> - psutil
> - numexpr
> - traits
> - pyface
> - traitsui
> - imageio
> - tqdm
> - spyder-kernels
> - pip:
> - mne
> - imageio-ffmpeg>=0.4.1
> - vtk>=9.0.1
> - pyvista>=0.24
> - pyvistaqt
> - mayavi
> - PySurfer[save_movie]
> - dipy --only-binary dipy
> - nibabel
> - nilearn
> - neo
> - python-picard
> - PyQt5>=5.10,<5.14; platform_system == "Darwin"
> - PyQt5>=5.10; platform_system != "Darwin"
> MEG Technician
> The Mind Research Network
> 1101 Yale Blvd. NE
> Albuquerque, New Mexico 87106
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