When echoing the variable SUBJECT, KER_MBSR_111 is printed... and 118's Talairach is still added when loading surfaces in mne_analyze<br><br>-matt<br><br><div class="gmail_quote">On Thu, Aug 12, 2010 at 3:42 PM, Daniel G. Wakeman <span dir="ltr"><<a href="mailto:dgwakeman@gmail.com">dgwakeman@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">What do you get when you type echo $SUBJECT?<br><font color="#888888">
<br>
D</font><div><div></div><div class="h5"><br>
On 12 Aug 2010, at 20:37, <a href="mailto:msacchet@nmr.mgh.harvard.edu" target="_blank">msacchet@nmr.mgh.harvard.edu</a> wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Thank you in advance,<br>
<br>
For a given subject, the Talairach transform from a different subject is<br>
being added when loading a surface in mne_analyze. For this subject there<br>
also appears to be abberation in further processing. How does mne_analyze<br>
call the Talairach when loading inflated surfaces? Does this indicate that<br>
I had the wrong subject set during a previous processing step? The given<br>
subject does have the correct talairach.xfm file, but for some reason<br>
another subject's Talairach is called. Here are the last few lines printed<br>
from my linux terminal (111's Talairach transform should be added, but as<br>
can be seen, 118's is being called):<br>
<br>
Reading<br>
/autofs/space/kerrlab_002/users/MNE_Analysis/KER_MBSR/subjects/KER_MBSR_111/mri/T1.mgz...[done]<br>
Adding Talairach transforms...read<br>
/autofs/space/kerrlab_002/users/MBSR_data/MRI_files/FREESURFER/KER_MBSR_118/mri/transforms/talairach.xfm...[done]<br>
<br>
Any idea what might be occuring?<br>
<br>
Thanks again,<br>
<br>
Matthew<br>
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