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</o:shapelayout></xml><![endif]--></head><body lang=EN-GB link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Hello MNE_users,<o:p></o:p></p><p class=MsoNormal>I have a question regarding the command mne_compute_raw_inverse.<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>If I used that function with --labeldir option,<o:p></o:p></p><p class=MsoNormal>the output will collapse all the labels from the directory in one fif file, and I have one average waveform per ROI requested<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Example of command used:<o:p></o:p></p><p class=MsoNormal>mne_compute_raw_inverse --inv inv.fif --in subj.fif --labeldir /label/subject/ --out output.fif <o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Now I would like to export all the vertices within a ROI and not only one waveform average per ROI<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Example of command used:<o:p></o:p></p><p class=MsoNormal>mne_compute_raw_inverse --inv inv.fif --in subj.fif --label label.label --out output.fif <o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>For this output I have now in the fif file my different vertices included in the ROI, but at my surprise I have 3 vectors for each vertices (x,y,z)<o:p></o:p></p><p class=MsoNormal>I tried all the command (picknormalcomp, align_z) to obtain only one component per vertices but for now with no success..<o:p></o:p></p><p class=MsoNormal>Is ther a “magic option” that I am not aware of ?<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Best<o:p></o:p></p><p class=MsoNormal>Elisabeth<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>__________________________________________________________<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Dr Elisabeth Fonteneau<o:p></o:p></p><p class=MsoNormal>Neurolex Group<o:p></o:p></p><p class=MsoNormal>Department of Psychology<o:p></o:p></p><p class=MsoNormal>University of Cambridge<o:p></o:p></p><p class=MsoNormal>Downing Street, Cambridge CB2 3EB, UK<o:p></o:p></p><p class=MsoNormal>Phone: +44 1223 333 548<o:p></o:p></p><p class=MsoNormal>Email: <a href="mailto:ef309@cam.ac.uk"><span style='color:blue'>ef309@cam.ac.uk</span></a><o:p></o:p></p><p class=MsoNormal>Web: <a href="http://www.neurolex.psychol.cam.ac.uk/directory/ef309@cam.ac.uk"><span style='color:blue'>www.neurolex.psychol.cam.ac.uk/directory/ef309@cam.ac.uk</span></a><o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>