<div dir="ltr">Hi Kestas,<div><br></div><div>In my case, the problem was solved by adding libgfortran.so.1 to my library; the rest of this discussion must have been off-list or ended up in another thread. I believe somewhere on the list, someone sent me (via attachment) a copy of this file which I could download and put in <span style="font-family:arial,sans-serif;font-size:13px"> </span><span style="font-family:arial,sans-serif;font-size:13px">/usr/lib64/, which fixed the issue.</span></div>
<div><span style="font-family:arial,sans-serif;font-size:13px"><br></span></div><div><span style="font-family:arial,sans-serif;font-size:13px">Best,</span></div><div><span style="font-family:arial,sans-serif;font-size:13px">Steve</span></div>
</div><div class="gmail_extra"><br clear="all"><div><div dir="ltr"><div><br></div><div><br></div>Stephen Politzer-Ahles<br>New York University, Abu Dhabi<br>Neuroscience of Language Lab<br><a href="http://www.nyu.edu/projects/politzer-ahles/" target="_blank">http://www.nyu.edu/projects/politzer-ahles/</a><br>
</div></div>
<br><br><div class="gmail_quote">On Tue, Mar 18, 2014 at 9:38 PM, Kestas Kveraga <span dir="ltr"><<a href="mailto:kestas@nmr.mgh.harvard.edu" target="_blank">kestas@nmr.mgh.harvard.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Hi,<div>I was wondering whether this issue was solved, as I am having it as well (despite previously using identically scripted commands and .desc files to successfully make average stc files on a different data set).</div>
<div>The error doesn't provide much info - after compiling the individual stc files, after 'Temporal resampling...' the first subject stc file, it simply says [failed]. </div><div>Any ideas?</div><div><br></div>
<div>Thanks,</div><div>Kestas</div><div><br></div><div><br></div><div><div><div class="h5"><div><div>On Mar 31, 2012, at 6:44 AM, Stephen Politzer-Ahles wrote:</div><br><blockquote type="cite">Hi Alex,<br><br>Thank you. Here are links to two of my stc files and to the mne_average_estimates description file:<br>
<a href="http://dl.dropbox.com/u/9929284/AL023_ave-rh.stc" target="_blank">http://dl.dropbox.com/u/9929284/AL023_ave-rh.stc</a><br>
<a href="http://dl.dropbox.com/u/9929284/AL023_ave-lh.stc" target="_blank">http://dl.dropbox.com/u/9929284/AL023_ave-lh.stc</a><br><a href="http://dl.dropbox.com/u/9929284/stcdescrip" target="_blank">http://dl.dropbox.com/u/9929284/stcdescrip</a><br>
<br>
I made the stc files using the following command line:<br><br><blockquote style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex" class="gmail_quote">mne_make_movie --subject $SUBJECT --meas $SAMPLE/MEG/$SUBJECT/$SUBJECT"_ave.fif" --inv $SAMPLE/MEG/$SUBJECT/$SUBJECT"_ave-7-meg-inv.fif" --morph average --smooth 5 --stc $SAMPLE/MEG/$SUBJECT"_ave"<br>
</blockquote><br>(My directory structure is, within $SAMPLE I have a /subjects folder with the MRI data and an /MEG folder with the MEG data.) I didn't use the --bmin and --bmax options because I already did baseline correction when I averaged the MEG data.<br>
<br>After creating stc files like that for every subject, I ran <br><br><div style="margin-left:40px">mne_average_estimates --desc stcdescrip<br></div><br>using the attached description file.<br><br>Best,<br>Steve<br><br>
<div class="gmail_quote">On Sat, Mar 31, 2012 at 3:47 AM, Alexandre Gramfort <span dir="ltr"><<a href="mailto:gramfort@nmr.mgh.harvard.edu" target="_blank">gramfort@nmr.mgh.harvard.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
hi Steve,<br>
<br>
In case you have not solved your problem yet, can you share a couple<br>
of stc files that cause<br>
the problem and give me the exact command line you typed?<br>
<br>
Alex<br>
<div><div><br>
On Fri, Mar 30, 2012 at 8:30 PM, Stephen Politzer-Ahles<br>
<<a href="mailto:politzerahless@gmail.com" target="_blank">politzerahless@gmail.com</a>> wrote:<br>
> Hello,<br>
><br>
> I'm encountering an error running mne_average_estimates. The program<br>
> successfully loads all my stc files and sets up the time scale, but then I<br>
> get:<br>
><br>
> Temporal resampling...<br>
> /<path to my data>/subj001_ave-lh.stc .. LH .. [failed]<br>
><br>
> Before running mne_average_estimates, I had first created an average brain<br>
> in Freesurfer (make_average_subject), then created morph maps from each<br>
> subject to the average brain (mne_make_morph_maps --from <subject> --to<br>
> average), then for each subject did current estimates using mne_make_movie<br>
> with "--morph average" specified, so for each subject I have both<br>
> <subject>-lh.stc. and <subject>-rh.stc. For mne_average_estimates, my<br>
> description file looks like this:<br>
><br>
> stc /<path_to_my_data>/subj001_ave-lh.stc<br>
> stc /<path_to_my_data>/subj001_ave-rh.stc<br>
> stc /<path_to_my_data>/subj002_ave-lh.stc<br>
> stc /<path_to_my_data>/subj002_ave-rh.stc<br>
> stc /<path_to_my_data>/subj003_ave-lh.stc<br>
> ...<br>
> deststc /<path_to_my_data>/averagestc<br>
><br>
> (I also tried the same thing but without including the "-lh.stc" and<br>
> "-rh.stc" in my description file, but I got the same error.)<br>
><br>
> Any suggestions or guidance would be greatly appreciated. Thank you very<br>
> much!<br>
> Steve Politzer-Ahles<br>
><br>
> --<br>
> Stephen Politzer-Ahles<br>
> University of Kansas<br>
> Linguistics Department<br>
> <a href="http://www.linguistics.ku.edu/" target="_blank">http://www.linguistics.ku.edu/</a><br>
><br>
</div></div>> _______________________________________________<br>
> Mne_analysis mailing list<br>
> <a href="mailto:Mne_analysis@nmr.mgh.harvard.edu" target="_blank">Mne_analysis@nmr.mgh.harvard.edu</a><br>
> <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis" target="_blank">https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a><br>
><br>
><br>
> The information in this e-mail is intended only for the person to whom it is<br>
> addressed. If you believe this e-mail was sent to you in error and the<br>
> e-mail<br>
> contains patient information, please contact the Partners Compliance<br>
> HelpLine at<br>
> <a href="http://www.partners.org/complianceline" target="_blank">http://www.partners.org/complianceline</a> . If the e-mail was sent to you in<br>
> error<br>
> but does not contain patient information, please contact the sender and<br>
> properly<br>
> dispose of the e-mail.<br>
><br>
</blockquote></div><br><br clear="all"><br>-- <br>Stephen Politzer-Ahles<br>University of Kansas<br>Linguistics Department<br><a href="http://www.linguistics.ku.edu/" target="_blank">http://www.linguistics.ku.edu/</a><br>
_______________________________________________<br>Mne_analysis mailing list<br><a href="mailto:Mne_analysis@nmr.mgh.harvard.edu" target="_blank">Mne_analysis@nmr.mgh.harvard.edu</a><br><a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis" target="_blank">https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a></blockquote>
</div><br></div></div><div>
<span style="text-indent:0px;letter-spacing:normal;font-variant:normal;text-align:-webkit-auto;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:Helvetica;word-spacing:0px"><span style="text-indent:0px;letter-spacing:normal;font-variant:normal;text-align:-webkit-auto;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:Helvetica;word-spacing:0px"><div style="word-wrap:break-word">
<div>Kestas Kveraga, Ph.D.</div><div>Instructor in Radiology/Neuroscience</div><div class=""><div>Martinos Center for Biomedical Imaging</div></div><div>MGH-Harvard Medical School</div><div><br></div><div><br></div></div>
</span><br></span><br>
</div>
<br></div></div></blockquote></div><br></div>